A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1979.8
nTPM
Monaco:
1005.4
nTPM
Schmiedel:
53.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1979.8
HPA sample
nTPM
Memory B-cell nTPM: 1979.8
Samples: 6
Max nTPM: 2137.2
Min nTPM: 1649.2
P10809_1017
1836.8
P10809_1025
2137.2
P10809_1044
1649.2
P10809_1063
2099.4
P10809_1092
2035.5
P10809_1105
2120.6
Naive B-cell nTPM: 1667.5
Samples: 6
Max nTPM: 1848.2
Min nTPM: 1450.6
P10809_1011
1450.6
P10809_1029
1738.0
P10809_1048
1624.2
P10809_1067
1785.5
P10809_1091
1558.5
P10809_1104
1848.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1005.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 963.6
Samples: 4
Max nTPM: 1475.6
Min nTPM: 319.8
RHH5310_R3677
1050.9
RHH5218_R3590
319.8
RHH5247_R3619
1475.6
RHH5276_R3648
1008.0
Naive B-cell nTPM: 1005.4
Samples: 4
Max nTPM: 1481.5
Min nTPM: 430.2
RHH5308_R3675
1346.2
RHH5216_R3588
430.2
RHH5245_R3617
1481.5
RHH5274_R3646
763.7
Non-switched memory B-cell nTPM: 896.3
Samples: 4
Max nTPM: 1250.2
Min nTPM: 587.7
RHH5309_R3676
1250.2
RHH5217_R3589
587.7
RHH5246_R3618
658.9
RHH5275_R3647
1088.3
Plasmablast nTPM: 891.9
Samples: 4
Max nTPM: 1132.3
Min nTPM: 611.3
RHH5312_R3679
1132.3
RHH5220_R3592
611.3
RHH5249_R3621
975.7
RHH5278_R3650
848.4
Switched memory B-cell nTPM: 901.8
Samples: 4
Max nTPM: 1343.8
Min nTPM: 636.5
RHH5311_R3678
1343.8
RHH5219_R3591
777.4
RHH5248_R3620
636.5
RHH5277_R3649
849.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.5
Schmiedel sample id
TPM
Naive B-cell TPM: 53.5
Samples: 91
Max TPM: 92.6
Min TPM: 27.5
B_CELL_NAIVE_1
92.6
B_CELL_NAIVE_2
86.0
B_CELL_NAIVE_3
79.4
B_CELL_NAIVE_4
76.4
B_CELL_NAIVE_5
75.5
B_CELL_NAIVE_6
75.4
B_CELL_NAIVE_7
74.0
B_CELL_NAIVE_8
71.3
B_CELL_NAIVE_9
69.8
B_CELL_NAIVE_10
69.4
B_CELL_NAIVE_11
68.8
B_CELL_NAIVE_12
67.1
B_CELL_NAIVE_13
63.1
B_CELL_NAIVE_14
62.9
B_CELL_NAIVE_15
62.7
B_CELL_NAIVE_16
62.4
B_CELL_NAIVE_17
62.0
B_CELL_NAIVE_18
61.9
B_CELL_NAIVE_19
61.1
B_CELL_NAIVE_20
60.2
B_CELL_NAIVE_21
59.5
B_CELL_NAIVE_22
58.7
B_CELL_NAIVE_23
58.3
B_CELL_NAIVE_24
58.2
B_CELL_NAIVE_25
57.8
B_CELL_NAIVE_26
57.8
B_CELL_NAIVE_27
57.5
B_CELL_NAIVE_28
57.4
B_CELL_NAIVE_29
56.8
B_CELL_NAIVE_30
56.5
B_CELL_NAIVE_31
56.3
B_CELL_NAIVE_32
56.3
B_CELL_NAIVE_33
56.1
B_CELL_NAIVE_34
55.9
B_CELL_NAIVE_35
55.6
B_CELL_NAIVE_36
55.1
B_CELL_NAIVE_37
54.8
B_CELL_NAIVE_38
54.0
B_CELL_NAIVE_39
54.0
B_CELL_NAIVE_40
53.6
B_CELL_NAIVE_41
53.4
B_CELL_NAIVE_42
53.2
B_CELL_NAIVE_43
53.2
B_CELL_NAIVE_44
52.9
B_CELL_NAIVE_45
52.8
B_CELL_NAIVE_46
52.6
B_CELL_NAIVE_47
52.3
B_CELL_NAIVE_48
52.2
B_CELL_NAIVE_49
52.0
B_CELL_NAIVE_50
51.8
B_CELL_NAIVE_51
51.1
B_CELL_NAIVE_52
51.0
B_CELL_NAIVE_53
50.9
B_CELL_NAIVE_54
50.8
B_CELL_NAIVE_55
50.6
B_CELL_NAIVE_56
50.3
B_CELL_NAIVE_57
50.3
B_CELL_NAIVE_58
50.1
B_CELL_NAIVE_59
50.0
B_CELL_NAIVE_60
50.0
B_CELL_NAIVE_61
49.1
B_CELL_NAIVE_62
49.0
B_CELL_NAIVE_63
48.5
B_CELL_NAIVE_64
48.1
B_CELL_NAIVE_65
48.0
B_CELL_NAIVE_66
47.3
B_CELL_NAIVE_67
46.3
B_CELL_NAIVE_68
46.0
B_CELL_NAIVE_69
46.0
B_CELL_NAIVE_70
45.7
B_CELL_NAIVE_71
45.6
B_CELL_NAIVE_72
45.2
B_CELL_NAIVE_73
44.4
B_CELL_NAIVE_74
43.6
B_CELL_NAIVE_75
43.5
B_CELL_NAIVE_76
43.4
B_CELL_NAIVE_77
42.5
B_CELL_NAIVE_78
42.5
B_CELL_NAIVE_79
42.1
B_CELL_NAIVE_80
42.0
B_CELL_NAIVE_81
41.4
B_CELL_NAIVE_82
39.9
B_CELL_NAIVE_83
39.9
B_CELL_NAIVE_84
38.2
B_CELL_NAIVE_85
37.7
B_CELL_NAIVE_86
36.8
B_CELL_NAIVE_87
36.5
B_CELL_NAIVE_88
36.2
B_CELL_NAIVE_89
31.9
B_CELL_NAIVE_90
29.3
B_CELL_NAIVE_91
27.5
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