A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
870.2
nTPM
Monaco:
638.7
nTPM
Schmiedel:
15.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
870.2
HPA sample
nTPM
Classical monocyte nTPM: 870.3
Samples: 6
Max nTPM: 1345.4
Min nTPM: 549.1
P10809_1003
1345.4
P10809_1020
842.3
P10809_1039
753.1
P10809_1058
811.4
P10809_1080
549.1
P10809_1107
920.2
Intermediate monocyte nTPM: 768.9
Samples: 6
Max nTPM: 1113.5
Min nTPM: 527.4
P10809_1004
678.3
P10809_1023
906.6
P10809_1042
747.5
P10809_1061
527.4
P10809_1081
639.9
P10809_1108
1113.5
Non-classical monocyte nTPM: 631.4
Samples: 5
Max nTPM: 859.9
Min nTPM: 482.3
P10809_1005
684.7
P10809_1053
621.4
P10809_1072
482.3
P10809_1082
508.8
P10809_1109
859.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
638.7
Monaco sample
nTPM
Classical monocyte nTPM: 485.6
Samples: 4
Max nTPM: 594.9
Min nTPM: 311.3
RHH5313_R3680
594.9
RHH5221_R3593
311.3
RHH5250_R3622
473.4
RHH5279_R3651
562.9
Intermediate monocyte nTPM: 638.7
Samples: 4
Max nTPM: 804.3
Min nTPM: 522.8
RHH5314_R3681
804.3
RHH5222_R3594
550.4
RHH5251_R3623
677.4
RHH5280_R3652
522.8
Non-classical monocyte nTPM: 415.0
Samples: 4
Max nTPM: 551.6
Min nTPM: 316.3
RHH5315_R3682
551.6
RHH5223_R3595
344.0
RHH5252_R3624
448.1
RHH5281_R3653
316.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.5
Schmiedel sample id
TPM
Classical monocyte TPM: 12.2
Samples: 91
Max TPM: 18.1
Min TPM: 6.3
MONOCYTES_1
18.1
MONOCYTES_2
17.7
MONOCYTES_3
17.5
MONOCYTES_4
16.5
MONOCYTES_5
16.5
MONOCYTES_6
16.4
MONOCYTES_7
15.8
MONOCYTES_8
15.8
MONOCYTES_9
15.6
MONOCYTES_10
15.5
MONOCYTES_11
15.5
MONOCYTES_12
15.4
MONOCYTES_13
15.1
MONOCYTES_14
15.0
MONOCYTES_15
14.5
MONOCYTES_16
14.4
MONOCYTES_17
14.4
MONOCYTES_18
14.3
MONOCYTES_19
14.3
MONOCYTES_20
14.3
MONOCYTES_21
14.2
MONOCYTES_22
14.2
MONOCYTES_23
14.0
MONOCYTES_24
14.0
MONOCYTES_25
13.9
MONOCYTES_26
13.8
MONOCYTES_27
13.7
MONOCYTES_28
13.6
MONOCYTES_29
13.5
MONOCYTES_30
13.4
MONOCYTES_31
13.3
MONOCYTES_32
13.2
MONOCYTES_33
13.2
MONOCYTES_34
13.0
MONOCYTES_35
12.8
MONOCYTES_36
12.8
MONOCYTES_37
12.8
MONOCYTES_38
12.6
MONOCYTES_39
12.5
MONOCYTES_40
12.4
MONOCYTES_41
12.3
MONOCYTES_42
12.3
MONOCYTES_43
12.2
MONOCYTES_44
12.0
MONOCYTES_45
11.9
MONOCYTES_46
11.9
MONOCYTES_47
11.8
MONOCYTES_48
11.7
MONOCYTES_49
11.6
MONOCYTES_50
11.5
MONOCYTES_51
11.5
MONOCYTES_52
11.5
MONOCYTES_53
11.4
MONOCYTES_54
11.3
MONOCYTES_55
11.2
MONOCYTES_56
11.1
MONOCYTES_57
11.0
MONOCYTES_58
10.9
MONOCYTES_59
10.9
MONOCYTES_60
10.9
MONOCYTES_61
10.8
MONOCYTES_62
10.7
MONOCYTES_63
10.7
MONOCYTES_64
10.6
MONOCYTES_65
10.5
MONOCYTES_66
10.5
MONOCYTES_67
10.5
MONOCYTES_68
10.5
MONOCYTES_69
10.4
MONOCYTES_70
10.4
MONOCYTES_71
10.3
MONOCYTES_72
10.3
MONOCYTES_73
10.3
MONOCYTES_74
10.3
MONOCYTES_75
10.2
MONOCYTES_76
10.0
MONOCYTES_77
10.0
MONOCYTES_78
9.8
MONOCYTES_79
9.7
MONOCYTES_80
9.5
MONOCYTES_81
9.4
MONOCYTES_82
9.3
MONOCYTES_83
9.3
MONOCYTES_84
9.2
MONOCYTES_85
9.1
MONOCYTES_86
9.0
MONOCYTES_87
8.8
MONOCYTES_88
7.8
MONOCYTES_89
7.7
MONOCYTES_90
6.6
MONOCYTES_91
6.3
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Non-classical monocyte TPM: 15.5
Samples: 90
Max TPM: 27.0
Min TPM: 8.4
M2_1
27.0
M2_2
26.3
M2_3
25.1
M2_4
22.8
M2_5
21.8
M2_6
21.6
M2_7
21.0
M2_8
20.5
M2_9
20.2
M2_10
20.2
M2_11
19.7
M2_12
19.2
M2_13
19.1
M2_14
18.8
M2_15
18.2
M2_16
18.0
M2_17
17.7
M2_18
17.6
M2_19
17.5
M2_20
17.4
M2_21
17.1
M2_22
17.1
M2_23
17.1
M2_24
16.6
M2_25
16.6
M2_26
16.5
M2_27
16.5
M2_28
16.4
M2_29
16.3
M2_30
16.3
M2_31
15.9
M2_32
15.8
M2_33
15.7
M2_34
15.7
M2_35
15.7
M2_36
15.7
M2_37
15.7
M2_38
15.6
M2_39
15.4
M2_40
15.4
M2_41
15.4
M2_42
15.3
M2_43
15.1
M2_44
15.1
M2_45
15.1
M2_46
15.0
M2_47
15.0
M2_48
14.9
M2_49
14.9
M2_50
14.8
M2_51
14.7
M2_52
14.6
M2_53
14.5
M2_54
14.3
M2_55
14.3
M2_56
14.3
M2_57
14.3
M2_58
14.3
M2_59
14.3
M2_60
14.2
M2_61
14.1
M2_62
14.0
M2_63
13.7
M2_64
13.6
M2_65
13.4
M2_66
13.3
M2_67
13.3
M2_68
13.1
M2_69
13.0
M2_70
13.0
M2_71
13.0
M2_72
12.8
M2_73
12.7
M2_74
12.7
M2_75
12.6
M2_76
12.3
M2_77
12.3
M2_78
12.0
M2_79
11.9
M2_80
11.7
M2_81
11.5
M2_82
11.5
M2_83
11.3
M2_84
11.1
M2_85
10.8
M2_86
10.6
M2_87
10.6
M2_88
10.1
M2_89
9.1
M2_90
8.4
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