A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1487.8
nTPM
Monaco:
400.8
nTPM
Schmiedel:
33.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1487.8
HPA sample
nTPM
NK-cell nTPM: 1487.8
Samples: 6
Max nTPM: 1864.1
Min nTPM: 759.1
P10809_1013
1483.9
P10809_1033
1564.0
P10809_1052
1649.6
P10809_1071
1864.1
P10809_1093
759.1
P10809_1103
1606.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
400.8
Monaco sample
nTPM
NK-cell nTPM: 400.8
Samples: 4
Max nTPM: 489.3
Min nTPM: 322.3
RHH5316_R3683
489.3
RHH5224_R3596
322.3
RHH5253_R3625
390.3
RHH5282_R3654
401.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.7
Schmiedel sample id
TPM
NK-cell TPM: 33.7
Samples: 90
Max TPM: 73.5
Min TPM: 21.2
NK_1
73.5
NK_2
52.1
NK_3
48.3
NK_4
47.0
NK_5
46.3
NK_6
46.2
NK_7
46.1
NK_8
46.1
NK_9
45.4
NK_10
44.4
NK_11
43.6
NK_12
43.6
NK_13
43.0
NK_14
42.0
NK_15
41.9
NK_16
40.5
NK_17
40.2
NK_18
40.0
NK_19
39.9
NK_20
39.1
NK_21
38.9
NK_22
38.8
NK_23
38.7
NK_24
38.5
NK_25
38.5
NK_26
37.8
NK_27
37.7
NK_28
37.5
NK_29
37.1
NK_30
37.0
NK_31
36.5
NK_32
36.0
NK_33
35.7
NK_34
34.7
NK_35
34.0
NK_36
34.0
NK_37
33.8
NK_38
33.7
NK_39
33.6
NK_40
33.6
NK_41
33.5
NK_42
33.4
NK_43
32.6
NK_44
32.3
NK_45
31.9
NK_46
31.7
NK_47
31.4
NK_48
31.3
NK_49
31.1
NK_50
30.9
NK_51
30.8
NK_52
30.7
NK_53
30.6
NK_54
30.2
NK_55
30.2
NK_56
30.1
NK_57
29.8
NK_58
29.3
NK_59
29.3
NK_60
28.8
NK_61
28.6
NK_62
28.3
NK_63
28.3
NK_64
28.3
NK_65
28.0
NK_66
28.0
NK_67
27.9
NK_68
27.8
NK_69
27.7
NK_70
27.5
NK_71
27.4
NK_72
27.0
NK_73
26.7
NK_74
26.4
NK_75
26.4
NK_76
26.3
NK_77
26.1
NK_78
25.5
NK_79
25.4
NK_80
25.4
NK_81
24.9
NK_82
24.8
NK_83
24.6
NK_84
24.2
NK_85
23.7
NK_86
23.1
NK_87
22.1
NK_88
22.0
NK_89
21.9
NK_90
21.2
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