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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2258.4 nTPM
GTEx:2258.4 nTPM
FANTOM5:24.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA043724Antibody HPA046385
Squamous epithelial cells MediumMedium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2258.4
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2258.4
Samples: 170

Max nTPM: 5198.0
Min nTPM: 1180.4
Std nTPM: 657.0
Median nTPM: 2130.1
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 5198.0
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 5181.4
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 4853.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 4222.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 3944.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 3873.8
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 3680.9
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 3670.6
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 3527.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 3288.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 3241.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 3171.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 3127.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 3083.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 3081.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2997.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2989.6
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 2981.1
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2952.2
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 2909.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2884.6
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2865.7
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2813.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2794.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2768.8
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2767.1
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2756.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2736.6
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2733.3
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 2721.6
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2711.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2709.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2707.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2699.3
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2672.8
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2669.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2655.0
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 2645.5
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2626.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2611.2
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 2590.9
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2581.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2576.3
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2520.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2507.4
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2503.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2484.0
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 2463.6
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2454.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2451.7
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 2445.3
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 2440.9
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 2431.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2355.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 2350.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2341.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2334.3
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 2334.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2323.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2321.4
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 2314.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2313.9
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 2309.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2309.3
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 2306.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2291.8
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2272.2
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2265.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2246.9
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2233.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2225.0
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2212.2
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2208.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 2202.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2191.9
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2190.5
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 2189.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2185.3
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2170.5
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2169.3
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2147.1
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 2140.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 2139.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2134.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2131.9
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 2128.4
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2106.5
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 2084.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 2082.4
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2077.2
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2076.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2075.4
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 2071.0
GTEX-11I78-2026-SM-5987C 50-59 years, female 2064.2
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2058.9
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 2047.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2044.7
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2034.7
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2016.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2014.9
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2013.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2012.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1994.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1988.5
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1984.1
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1982.3
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1979.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1979.1
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1973.5
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 1971.3
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 1965.1
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1952.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1937.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1931.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1927.1
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1922.8
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1905.9
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1894.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1893.6
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1882.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1875.7
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1871.9
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1868.6
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1863.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1857.6
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1853.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1849.7
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1834.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1825.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1814.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1813.2
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1800.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1779.3
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1768.6
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1758.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1749.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1739.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1726.4
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1721.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1713.9
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1713.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1708.7
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1694.7
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1692.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1686.8
GTEX-1C475-0526-SM-793AC 40-49 years, female 1686.2
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1680.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1658.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1650.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1650.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1639.2
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 1637.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1633.8
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1613.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1611.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1592.2
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1581.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1581.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1581.2
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1565.6
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1541.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1506.6
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1475.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1465.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1437.9
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1404.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1390.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1380.8
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1292.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1180.4
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

24.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 24.9
FF:10204-103F6 68 years, female 24.9

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