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RPL17
HPA
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  • TISSUE

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  • RPL17
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1685.9 nTPM
HPA:899.1 nTPM
GTEx:1685.9 nTPM
FANTOM5:63.2 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA043724Antibody HPA046385
Glandular cells HighHigh





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

899.1
overview
Male, age 65
Small intestine sample 232
nTPM: 1113.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 854.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 824.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 804

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1685.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1685.9
Samples: 207

Max nTPM: 3326.0
Min nTPM: 644.8
Std nTPM: 461.0
Median nTPM: 1657.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 3326.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3189.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 3107.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2908.6
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 2829.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2826.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2737.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2694.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2666.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2648.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2647.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 2607.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2596.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2484.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2430.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2397.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2366.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2343.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 2328.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2324.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2279.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2251.0
GTEX-1192X-2526-SM-59868 50-59 years, male 2211.9
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 2176.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2168.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2165.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2162.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2133.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2131.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 2104.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2097.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2090.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2087.4
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 2064.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2060.9
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 2058.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 2046.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 2044.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2043.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2032.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2022.8
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 2009.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 2001.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1994.4
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 1984.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1981.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1959.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1953.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1941.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1940.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1938.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1935.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1928.4
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 1925.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1925.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1913.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1896.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1890.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1883.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1878.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1873.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1866.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1859.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1854.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1842.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1837.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1829.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1821.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1820.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1819.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1814.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1812.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1804.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1799.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1794.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1784.2
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 1783.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1775.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1773.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1761.3
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 1756.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 1756.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1745.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1742.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1741.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1733.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1726.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1723.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1718.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1714.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1712.8
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 1712.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1708.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1706.6
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 1704.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1699.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1689.8
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 1685.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1684.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1679.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1679.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1675.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1666.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1657.2
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 1643.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1630.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1621.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1615.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1614.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1605.0
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 1595.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1589.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1570.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1563.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1562.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1561.0
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 1556.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1550.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1542.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1541.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1534.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1532.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1523.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1516.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1514.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1510.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1500.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1496.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1493.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1487.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1486.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1476.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1470.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1462.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1461.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1459.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1444.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1441.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1438.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1434.8
GTEX-178AV-1226-SM-GOR11 40-49 years, male 1421.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1418.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1418.6
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 1415.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1414.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1413.4
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 1409.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1408.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1397.3
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 1392.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1392.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1377.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1376.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1375.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1373.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1370.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1369.9
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 1364.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1348.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1334.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1325.0
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 1320.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1314.4
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 1311.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1306.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1304.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1296.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1279.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1271.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1267.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1260.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1252.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1251.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1244.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1236.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1229.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1227.0
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 1226.5
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 1222.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1221.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1221.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 1208.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1205.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1198.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1192.4
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 1183.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1145.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1139.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1132.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1120.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1109.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1094.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1066.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1065.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1049.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1042.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1039.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1027.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1022.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1017.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1013.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 976.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 975.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 969.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 900.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 878.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 644.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

63.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 63.2
FF:10024-101D6 15,40,85 years, mixed 63.2

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