A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.5
nTPM
Monaco:
136.5
nTPM
Schmiedel:
98.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.5
HPA sample
nTPM
Memory B-cell nTPM: 28.5
Samples: 6
Max nTPM: 40.9
Min nTPM: 19.3
P10809_1017
40.9
P10809_1025
31.7
P10809_1044
19.3
P10809_1063
25.1
P10809_1092
31.1
P10809_1105
23.2
Naive B-cell nTPM: 26.7
Samples: 6
Max nTPM: 40.3
Min nTPM: 10.5
P10809_1011
31.4
P10809_1029
20.5
P10809_1048
40.3
P10809_1067
10.5
P10809_1091
29.1
P10809_1104
28.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
136.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 136.5
Samples: 4
Max nTPM: 184.3
Min nTPM: 90.1
RHH5310_R3677
90.1
RHH5218_R3590
151.4
RHH5247_R3619
120.2
RHH5276_R3648
184.3
Naive B-cell nTPM: 121.2
Samples: 4
Max nTPM: 187.7
Min nTPM: 85.2
RHH5308_R3675
93.7
RHH5216_R3588
85.2
RHH5245_R3617
187.7
RHH5274_R3646
118.3
Non-switched memory B-cell nTPM: 109.4
Samples: 4
Max nTPM: 136.5
Min nTPM: 82.6
RHH5309_R3676
95.3
RHH5217_R3589
82.6
RHH5246_R3618
123.3
RHH5275_R3647
136.5
Plasmablast nTPM: 89.9
Samples: 4
Max nTPM: 103.2
Min nTPM: 67.0
RHH5312_R3679
67.0
RHH5220_R3592
100.4
RHH5249_R3621
88.8
RHH5278_R3650
103.2
Switched memory B-cell nTPM: 91.1
Samples: 4
Max nTPM: 131.7
Min nTPM: 44.4
RHH5311_R3678
44.4
RHH5219_R3591
122.2
RHH5248_R3620
65.9
RHH5277_R3649
131.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
98.1
Schmiedel sample id
TPM
Naive B-cell TPM: 98.1
Samples: 91
Max TPM: 133.9
Min TPM: 65.6
B_CELL_NAIVE_1
133.9
B_CELL_NAIVE_2
133.2
B_CELL_NAIVE_3
130.9
B_CELL_NAIVE_4
130.1
B_CELL_NAIVE_5
121.8
B_CELL_NAIVE_6
120.9
B_CELL_NAIVE_7
120.3
B_CELL_NAIVE_8
119.5
B_CELL_NAIVE_9
116.9
B_CELL_NAIVE_10
115.2
B_CELL_NAIVE_11
114.2
B_CELL_NAIVE_12
113.6
B_CELL_NAIVE_13
112.1
B_CELL_NAIVE_14
111.9
B_CELL_NAIVE_15
111.8
B_CELL_NAIVE_16
111.4
B_CELL_NAIVE_17
109.1
B_CELL_NAIVE_18
108.7
B_CELL_NAIVE_19
107.9
B_CELL_NAIVE_20
107.7
B_CELL_NAIVE_21
106.5
B_CELL_NAIVE_22
106.1
B_CELL_NAIVE_23
105.8
B_CELL_NAIVE_24
105.2
B_CELL_NAIVE_25
104.7
B_CELL_NAIVE_26
104.5
B_CELL_NAIVE_27
103.6
B_CELL_NAIVE_28
103.5
B_CELL_NAIVE_29
103.4
B_CELL_NAIVE_30
102.8
B_CELL_NAIVE_31
102.5
B_CELL_NAIVE_32
102.4
B_CELL_NAIVE_33
101.7
B_CELL_NAIVE_34
101.5
B_CELL_NAIVE_35
101.0
B_CELL_NAIVE_36
100.8
B_CELL_NAIVE_37
100.6
B_CELL_NAIVE_38
100.5
B_CELL_NAIVE_39
100.0
B_CELL_NAIVE_40
99.3
B_CELL_NAIVE_41
99.0
B_CELL_NAIVE_42
98.9
B_CELL_NAIVE_43
98.7
B_CELL_NAIVE_44
98.5
B_CELL_NAIVE_45
98.4
B_CELL_NAIVE_46
98.4
B_CELL_NAIVE_47
97.7
B_CELL_NAIVE_48
97.6
B_CELL_NAIVE_49
96.8
B_CELL_NAIVE_50
96.6
B_CELL_NAIVE_51
96.4
B_CELL_NAIVE_52
96.4
B_CELL_NAIVE_53
96.3
B_CELL_NAIVE_54
96.2
B_CELL_NAIVE_55
96.2
B_CELL_NAIVE_56
95.1
B_CELL_NAIVE_57
94.1
B_CELL_NAIVE_58
92.4
B_CELL_NAIVE_59
92.3
B_CELL_NAIVE_60
92.2
B_CELL_NAIVE_61
91.5
B_CELL_NAIVE_62
91.5
B_CELL_NAIVE_63
91.4
B_CELL_NAIVE_64
91.2
B_CELL_NAIVE_65
90.7
B_CELL_NAIVE_66
90.0
B_CELL_NAIVE_67
90.0
B_CELL_NAIVE_68
89.7
B_CELL_NAIVE_69
89.7
B_CELL_NAIVE_70
88.9
B_CELL_NAIVE_71
88.7
B_CELL_NAIVE_72
88.5
B_CELL_NAIVE_73
88.1
B_CELL_NAIVE_74
87.9
B_CELL_NAIVE_75
87.9
B_CELL_NAIVE_76
85.2
B_CELL_NAIVE_77
85.0
B_CELL_NAIVE_78
84.9
B_CELL_NAIVE_79
83.8
B_CELL_NAIVE_80
81.6
B_CELL_NAIVE_81
81.0
B_CELL_NAIVE_82
80.5
B_CELL_NAIVE_83
80.0
B_CELL_NAIVE_84
79.4
B_CELL_NAIVE_85
78.9
B_CELL_NAIVE_86
78.4
B_CELL_NAIVE_87
76.0
B_CELL_NAIVE_88
70.1
B_CELL_NAIVE_89
67.1
B_CELL_NAIVE_90
65.7
B_CELL_NAIVE_91
65.6
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