A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
131.6
nTPM
Monaco:
504.3
nTPM
Schmiedel:
322.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
131.6
HPA sample
nTPM
NK-cell nTPM: 131.5
Samples: 6
Max nTPM: 172.6
Min nTPM: 114.0
P10809_1013
114.0
P10809_1033
134.7
P10809_1052
123.7
P10809_1071
123.0
P10809_1093
121.3
P10809_1103
172.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
504.3
Monaco sample
nTPM
NK-cell nTPM: 504.3
Samples: 4
Max nTPM: 545.9
Min nTPM: 441.1
RHH5316_R3683
441.1
RHH5224_R3596
537.1
RHH5253_R3625
545.9
RHH5282_R3654
493.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
322.4
Schmiedel sample id
TPM
NK-cell TPM: 322.4
Samples: 90
Max TPM: 394.7
Min TPM: 243.8
NK_1
394.7
NK_2
384.3
NK_3
380.9
NK_4
378.6
NK_5
371.4
NK_6
368.2
NK_7
363.6
NK_8
360.2
NK_9
359.0
NK_10
357.3
NK_11
357.3
NK_12
357.1
NK_13
356.4
NK_14
355.8
NK_15
353.2
NK_16
352.3
NK_17
351.9
NK_18
350.0
NK_19
349.6
NK_20
347.6
NK_21
347.3
NK_22
346.8
NK_23
344.0
NK_24
343.1
NK_25
343.0
NK_26
341.9
NK_27
341.5
NK_28
340.8
NK_29
340.4
NK_30
340.4
NK_31
340.2
NK_32
338.3
NK_33
337.8
NK_34
336.7
NK_35
335.7
NK_36
334.8
NK_37
333.7
NK_38
332.6
NK_39
329.4
NK_40
326.8
NK_41
326.1
NK_42
325.2
NK_43
324.4
NK_44
323.9
NK_45
323.0
NK_46
322.9
NK_47
322.4
NK_48
322.0
NK_49
320.3
NK_50
320.0
NK_51
319.4
NK_52
319.0
NK_53
317.6
NK_54
316.9
NK_55
315.4
NK_56
314.0
NK_57
313.1
NK_58
310.8
NK_59
309.9
NK_60
309.6
NK_61
305.7
NK_62
304.9
NK_63
304.2
NK_64
303.4
NK_65
303.1
NK_66
302.2
NK_67
300.0
NK_68
299.3
NK_69
299.2
NK_70
298.2
NK_71
297.1
NK_72
296.1
NK_73
295.3
NK_74
294.7
NK_75
292.7
NK_76
291.9
NK_77
288.0
NK_78
284.8
NK_79
283.8
NK_80
278.3
NK_81
276.3
NK_82
274.2
NK_83
272.3
NK_84
272.2
NK_85
272.1
NK_86
271.9
NK_87
270.0
NK_88
269.3
NK_89
266.9
NK_90
243.8
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