A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
84.4
nTPM
Monaco:
348.8
nTPM
Schmiedel:
311.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.4
HPA sample
nTPM
Classical monocyte nTPM: 40.3
Samples: 6
Max nTPM: 58.1
Min nTPM: 26.3
P10809_1003
58.1
P10809_1020
44.7
P10809_1039
50.7
P10809_1058
26.3
P10809_1080
27.1
P10809_1107
35.1
Intermediate monocyte nTPM: 53.7
Samples: 6
Max nTPM: 81.0
Min nTPM: 18.8
P10809_1004
81.0
P10809_1023
63.1
P10809_1042
61.7
P10809_1061
51.4
P10809_1081
18.8
P10809_1108
46.0
Non-classical monocyte nTPM: 84.4
Samples: 5
Max nTPM: 153.5
Min nTPM: 47.1
P10809_1005
100.4
P10809_1053
51.8
P10809_1072
153.5
P10809_1082
47.1
P10809_1109
69.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
348.8
Monaco sample
nTPM
Classical monocyte nTPM: 181.5
Samples: 4
Max nTPM: 238.3
Min nTPM: 149.8
RHH5313_R3680
149.8
RHH5221_R3593
238.3
RHH5250_R3622
173.8
RHH5279_R3651
163.9
Intermediate monocyte nTPM: 315.2
Samples: 4
Max nTPM: 491.9
Min nTPM: 195.0
RHH5314_R3681
195.0
RHH5222_R3594
491.9
RHH5251_R3623
335.8
RHH5280_R3652
238.1
Non-classical monocyte nTPM: 348.8
Samples: 4
Max nTPM: 467.2
Min nTPM: 280.1
RHH5315_R3682
280.1
RHH5223_R3595
467.2
RHH5252_R3624
361.6
RHH5281_R3653
286.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
311.0
Schmiedel sample id
TPM
Classical monocyte TPM: 207.8
Samples: 91
Max TPM: 284.2
Min TPM: 151.9
MONOCYTES_1
284.2
MONOCYTES_2
265.7
MONOCYTES_3
251.7
MONOCYTES_4
250.0
MONOCYTES_5
248.4
MONOCYTES_6
242.8
MONOCYTES_7
241.7
MONOCYTES_8
238.9
MONOCYTES_9
237.1
MONOCYTES_10
236.2
MONOCYTES_11
235.4
MONOCYTES_12
233.7
MONOCYTES_13
233.5
MONOCYTES_14
232.7
MONOCYTES_15
231.1
MONOCYTES_16
230.6
MONOCYTES_17
230.5
MONOCYTES_18
229.2
MONOCYTES_19
228.9
MONOCYTES_20
228.9
MONOCYTES_21
228.7
MONOCYTES_22
228.6
MONOCYTES_23
226.9
MONOCYTES_24
226.7
MONOCYTES_25
225.6
MONOCYTES_26
225.2
MONOCYTES_27
222.6
MONOCYTES_28
222.3
MONOCYTES_29
221.9
MONOCYTES_30
220.9
MONOCYTES_31
219.5
MONOCYTES_32
218.6
MONOCYTES_33
215.1
MONOCYTES_34
214.6
MONOCYTES_35
214.4
MONOCYTES_36
212.9
MONOCYTES_37
212.5
MONOCYTES_38
211.8
MONOCYTES_39
209.7
MONOCYTES_40
208.7
MONOCYTES_41
207.7
MONOCYTES_42
206.4
MONOCYTES_43
205.2
MONOCYTES_44
205.1
MONOCYTES_45
205.0
MONOCYTES_46
204.9
MONOCYTES_47
203.6
MONOCYTES_48
203.5
MONOCYTES_49
203.2
MONOCYTES_50
203.1
MONOCYTES_51
202.8
MONOCYTES_52
201.1
MONOCYTES_53
201.0
MONOCYTES_54
200.4
MONOCYTES_55
199.0
MONOCYTES_56
198.5
MONOCYTES_57
198.2
MONOCYTES_58
197.6
MONOCYTES_59
197.2
MONOCYTES_60
197.0
MONOCYTES_61
196.6
MONOCYTES_62
196.4
MONOCYTES_63
196.0
MONOCYTES_64
194.8
MONOCYTES_65
194.2
MONOCYTES_66
194.0
MONOCYTES_67
192.5
MONOCYTES_68
191.3
MONOCYTES_69
191.0
MONOCYTES_70
189.6
MONOCYTES_71
187.9
MONOCYTES_72
187.9
MONOCYTES_73
187.6
MONOCYTES_74
186.8
MONOCYTES_75
186.1
MONOCYTES_76
185.9
MONOCYTES_77
185.9
MONOCYTES_78
185.5
MONOCYTES_79
185.2
MONOCYTES_80
182.7
MONOCYTES_81
181.1
MONOCYTES_82
180.3
MONOCYTES_83
177.3
MONOCYTES_84
177.3
MONOCYTES_85
174.6
MONOCYTES_86
171.1
MONOCYTES_87
168.4
MONOCYTES_88
165.3
MONOCYTES_89
162.4
MONOCYTES_90
162.0
MONOCYTES_91
151.9
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Non-classical monocyte TPM: 311.0
Samples: 90
Max TPM: 434.8
Min TPM: 228.3
M2_1
434.8
M2_2
373.4
M2_3
369.3
M2_4
364.8
M2_5
364.3
M2_6
359.7
M2_7
359.5
M2_8
357.9
M2_9
354.8
M2_10
352.4
M2_11
346.9
M2_12
346.4
M2_13
346.1
M2_14
341.2
M2_15
338.5
M2_16
335.8
M2_17
335.0
M2_18
331.2
M2_19
330.1
M2_20
328.6
M2_21
326.7
M2_22
325.4
M2_23
324.8
M2_24
323.7
M2_25
323.6
M2_26
323.5
M2_27
323.5
M2_28
323.1
M2_29
323.1
M2_30
322.2
M2_31
322.0
M2_32
321.4
M2_33
319.9
M2_34
319.6
M2_35
319.2
M2_36
318.1
M2_37
317.2
M2_38
316.7
M2_39
316.6
M2_40
316.5
M2_41
315.8
M2_42
313.6
M2_43
313.5
M2_44
312.2
M2_45
312.2
M2_46
311.8
M2_47
311.7
M2_48
311.5
M2_49
310.9
M2_50
310.4
M2_51
308.6
M2_52
308.3
M2_53
307.3
M2_54
307.1
M2_55
306.6
M2_56
306.4
M2_57
306.1
M2_58
305.7
M2_59
304.7
M2_60
303.3
M2_61
301.2
M2_62
301.0
M2_63
299.2
M2_64
293.8
M2_65
291.2
M2_66
290.1
M2_67
289.9
M2_68
289.2
M2_69
288.2
M2_70
288.1
M2_71
286.8
M2_72
285.2
M2_73
283.7
M2_74
283.7
M2_75
283.0
M2_76
279.6
M2_77
277.8
M2_78
277.5
M2_79
277.4
M2_80
274.8
M2_81
268.8
M2_82
268.4
M2_83
266.6
M2_84
265.1
M2_85
259.6
M2_86
259.1
M2_87
255.2
M2_88
247.7
M2_89
242.1
M2_90
228.3
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