Single cell type - LINC02203 - The Human Protein Atlas

LINC02203

Search result

Field

Cluster

Cell type

Category

Cluster

Cluster

Subsystem

BETA

SUMMARY

TISSUE

BRAIN

SINGLE CELL

IMMUNE

SUBCELL

CANCER

BLOOD

CELL LINE

STRUCTURE

INTERACTION

METABOLIC

ISOFORM

EVOLUTION

LINC02203

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	LINC02203
Gene descriptionⁱ Full gene name according to HGNC.	Long intergenic non-protein coding RNA 2203
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.	Membrane
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	1

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type expression clusterⁱ The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.	Early spermatids - Flagellar development (mainly)
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.	Group enriched (Early spermatids, Late primary spermatocytes)
Tau specificity scoreⁱ Tau specificity score is a numerical indicator of the specificity of the gene expression across cells or tissues. The value ranges from 0 and 1, where 0 indicates identical expression across all cells/tissue types, while 1 indicates expression in a single cell/tissue type.	0.98
Brain cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell cluster types based on snRNA-seq data from brain samples. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. "cell type" refer to one of the 34 cluster names used to summarize the 2.5 million cells included in the brain cell representation.	Cell type enhanced (Specialized neurotransmitter neurons)
Immune cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.	Not detected in immune cells
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); neXtProt protein existence (neXtProt evidence);and a Human Protein Atlas antibody- or RNA based score (HPA evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable.	Evidence at transcript level

ASSAYSⁱ

Single cell type

Expression clustering

SINGLE CELL TYPESⁱ A summary of normalized single cell RNA (nCPM) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. * Single nuclei
Single cell type groups RNA single cell type group specificity: Cell type enriched (Spermatogenic cell types)

EXPRESSION CLUSTERING & CORRELATIONⁱ

LINC02203 is part of cluster 78 Early spermatids - Flagellar development with confidenceⁱ 1
239 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on single cell RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data.	Clusterⁱ ID of the expression cluster of the neighboring gene.
SPANXN5	SPANX family member N5	0.7986	78
SPATA46	Spermatogenesis associated 46	0.7590	78
FNDC11	Fibronectin type III domain containing 11	0.7234	78
FAM221B	Family with sequence similarity 221 member B	0.7188	78
PDCL2	Phosducin like 2	0.7179	78
TEX33	Testis expressed 33	0.7175	78
SPACA4	Sperm acrosome associated 4	0.7098	78
ACTRT3	Actin related protein T3	0.6894	78
FAM209B	Family with sequence similarity 209 member B	0.6820	78
PRSS54	Serine protease 54	0.6816	78
FAM209A	Family with sequence similarity 209 member A	0.6814	78
ERICH2	Glutamate rich 2	0.6807	78
SPACA7	Sperm acrosome associated 7	0.6759	78
MS4A6E	Membrane spanning 4-domains A6E	0.6736	78
FTMT	Ferritin mitochondrial	0.6637	78

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

contact@proteinatlas.org

We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.