MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.2 nTPM
HPA Brain:81.3 nTPM
GTEx:51.2 nTPM
FANTOM5:126.4 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 81.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.5
2411 Female, age 72, unknown 84.8
1830 Male, age 51, unknown 74.4
2586 Male, age 75, left hemisphere 70.6
2019 Male, age 18, unknown 69.0
1833 Male, age 53, unknown 68.7
2666 Male, age 74, left hemisphere 64.4
2828 Female, age 72, unknown 63.4
1870 Female, age 42, unknown 62.1
1827 Male, age 72, unknown 59.3
2219 Male, age 76, both hemispheres 58.6
Dorsal raphe nucleus
nTPM: 53.1
2750 Male, age 76, both hemispheres 84.0
1828 Male, age 53, unknown 49.9
2047 Male, age 72, unknown 44.5
2016 Female, age 72, unknown 44.4
2298 Female, age 72, unknown 42.9
Inferior colliculus
nTPM: 47.0
1890 Male, age 53, unknown 52.9
2849 Male, age 72, unknown 50.6
2097 Female, age 72, unknown 43.3
1848 Female, age 42, unknown 41.4
Median raphe nucleus
nTPM: 63.9
2220 Male, age 76, midline 63.9
Periaquaductal grey, anterior
nTPM: 55.1
2502 Female, age 75, unknown 68.5
1795 Male, age 51, unknown 50.4
1947 Male, age 18, unknown 46.5
Periaquaductal grey, dorsal
nTPM: 41.3
2464 Female, age 72, unknown 57.0
1831 Male, age 72, unknown 38.5
1840 Male, age 53, unknown 36.8
2850 Male, age 76, both hemispheres 32.9
Periaquaductal grey, lateral
nTPM: 43.9
2272 Male, age 74, both hemispheres 49.9
2053 Male, age 18, unknown 46.3
2140 Male, age 76, both hemispheres 35.5
Pretectal area
nTPM: 52.0
2407 Male, age 75, both hemispheres 64.2
1944 Female, age 72, unknown 62.5
1815 Male, age 53, unknown 59.8
2007 Male, age 72, unknown 58.1
2825 Male, age 18, unknown 54.6
1816 Male, age 51, unknown 54.3
1817 Female, age 42, unknown 52.0
2316 Male, age 76, right hemisphere 45.9
2273 Male, age 74, both hemispheres 41.8
2667 Female, age 75, unknown 40.6
2224 Female, age 72, unknown 38.3
Red nucleus
nTPM: 81.3
2503 Female, age 72, unknown 100.0
1865 Male, age 51, unknown 90.0
2588 Male, age 74, left hemisphere 88.1
1904 Male, age 53, unknown 87.3
2227 Male, age 72, unknown 85.1
2769 Male, age 72, unknown 84.8
2584 Male, age 75, left hemisphere 84.3
2725 Female, age 75, unknown 74.0
2785 Male, age 18, unknown 73.6
2823 Male, age 76, right hemisphere 72.8
1954 Female, age 42, unknown 69.6
1821 Female, age 72, unknown 66.6
Substantia nigra
nTPM: 57.5
2583 Male, age 75, right hemisphere 78.3
2699 Male, age 18, unknown 61.2
1851 Male, age 51, unknown 60.3
1916 Female, age 42, unknown 60.3
1889 Female, age 72, unknown 58.8
1941 Male, age 53, unknown 58.3
2409 Female, age 72, unknown 54.3
2241 Male, age 72, unknown 49.5
2590 Female, age 75, unknown 49.4
2665 Male, age 74, both hemispheres 45.0
Superior colliculus
nTPM: 62.1
2668 Female, age 75, unknown 77.7
1913 Female, age 42, unknown 71.6
1995 Male, age 72, unknown 71.6
2261 Male, age 18, unknown 63.1
2087 Female, age 72, unknown 61.9
1796 Male, age 53, unknown 57.7
2587 Male, age 74, left hemisphere 56.6
1895 Male, age 76, right hemisphere 55.1
1839 Male, age 51, unknown 54.7
2664 Male, age 75, both hemispheres 51.2
Ventral tegmental area
nTPM: 67.4
2223 Female, age 72, unknown 92.8
2410 Female, age 72, unknown 69.4
1915 Female, age 42, unknown 65.4
2218 Male, age 76, both hemispheres 64.8
1942 Male, age 51, unknown 58.1
2021 Male, age 53, unknown 53.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 51.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.2
Samples: 183

Max nTPM: 231.5
Min nTPM: 7.3
Std nTPM: 33.1
Median nTPM: 43.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 231.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 203.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 188.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 164.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 157.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 148.0
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 143.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 129.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 105.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 105.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 100.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 126.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.4
FF:10158-103A5 76 years, female 126.4

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