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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:90.7 nTPM
HPA Brain:69.0 nTPM
GTEx:90.7 nTPM
FANTOM5:64.6 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 62.1
2194 Female, age 79, both hemispheres 73.7
2816 Male, age 47, midline 69.5
1981 Female, age 72, midline 62.9
2048 Male, age 55, midline 52.4
2565 Male, age 75, midline 52.0
Cervical spinal cord, dorsal horn
nTPM: 68.9
2296 Male, age 66, both hemispheres 108.1
2173 Female, age 72, unknown 87.7
1877 Male, age 55, unknown 59.6
2069 Male, age 47, both hemispheres 59.0
2297 Male, age 75, both hemispheres 52.1
2721 Male, age 90, both hemispheres 47.0
Cervical spinal cord, ventral horn
nTPM: 69.0
2068 Male, age 55, unknown 86.5
2820 Female, age 79, both hemispheres 81.0
2480 Male, age 75, both hemispheres 70.9
2295 Male, age 66, both hemispheres 63.0
2809 Male, age 90, both hemispheres 62.9
2098 Female, age 72, unknown 49.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 90.7
Samples: 204

Max nTPM: 239.2
Min nTPM: 11.7
Std nTPM: 43.4
Median nTPM: 85.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 239.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 231.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 219.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 209.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 204.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 198.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 193.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 185.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 177.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 176.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 172.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 170.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 166.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 160.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 157.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 157.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 155.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 155.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 155.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 152.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 152.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 152.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 147.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 143.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 142.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 141.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 141.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 140.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 139.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 137.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 136.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 136.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 135.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 135.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 134.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 131.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 130.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 130.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 124.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 123.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 123.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 121.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 120.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 118.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 118.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 117.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 117.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 117.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 114.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 112.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 111.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 110.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 109.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 108.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 108.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 106.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 106.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 106.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 105.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 105.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 105.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 105.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 104.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 104.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 102.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 102.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 101.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 101.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 100.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 100.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 99.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 99.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 99.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 99.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 99.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 98.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 97.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 97.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 97.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 95.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 94.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 94.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 93.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 92.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 91.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 91.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 91.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 90.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 90.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 89.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 89.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 89.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 89.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 89.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 88.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 88.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 88.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 88.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 88.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 88.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 87.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 85.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 85.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 85.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 85.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 84.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 83.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 82.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 82.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 81.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 80.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 80.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 80.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 79.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 77.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 77.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 77.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 77.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 76.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 76.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 76.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 76.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 75.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 75.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 75.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 74.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 73.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 73.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 73.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 72.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 72.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 71.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 69.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 69.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 69.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 69.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 69.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 68.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 67.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 66.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 66.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 65.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 64.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 64.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 63.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 63.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 63.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 63.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 61.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 61.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 60.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 60.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 60.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 60.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 59.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 57.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 56.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 55.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 55.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 54.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 54.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 54.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 53.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 53.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 53.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 52.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 51.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 50.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 50.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 49.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 49.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 49.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 48.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 47.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 46.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 46.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 46.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 45.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 44.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 44.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 44.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 43.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 42.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 41.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 39.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 38.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 36.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 35.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 35.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 35.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 32.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 32.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 30.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 29.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 28.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 28.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 27.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 27.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 25.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 25.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 24.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 22.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 20.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 11.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

64.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 64.6
FF:10181-103D1 60 years, female 69.3
FF:10159-103A6 76 years, female 59.8

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