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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
58.3
nTPM
HPA Brain:
111.3
nTPM
GTEx:
58.3
nTPM
FANTOM5:
91.3
Scaled Tags Per Million
Pig:
109.2
nTPM
Mouse:
47.7
nTPM
Allen mouse:
7.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
111.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 110.9
2411
Female, age 72, unknown
135.0
2219
Male, age 76, both hemispheres
122.6
1833
Male, age 53, unknown
114.2
2586
Male, age 75, left hemisphere
111.8
1870
Female, age 42, unknown
108.9
1830
Male, age 51, unknown
108.3
2019
Male, age 18, unknown
107.4
1827
Male, age 72, unknown
104.9
2828
Female, age 72, unknown
99.2
2666
Male, age 74, left hemisphere
97.1
Dorsal raphe nucleus nTPM: 88.2
2750
Male, age 76, both hemispheres
111.6
1828
Male, age 53, unknown
93.3
2298
Female, age 72, unknown
80.4
2016
Female, age 72, unknown
79.7
2047
Male, age 72, unknown
76.1
Inferior colliculus nTPM: 83.8
2097
Female, age 72, unknown
91.6
1890
Male, age 53, unknown
85.6
1848
Female, age 42, unknown
85.5
2849
Male, age 72, unknown
72.5
Median raphe nucleus nTPM: 84.3
2220
Male, age 76, midline
84.3
Periaquaductal grey, anterior nTPM: 92.4
1947
Male, age 18, unknown
102.5
2502
Female, age 75, unknown
89.2
1795
Male, age 51, unknown
85.6
Periaquaductal grey, dorsal nTPM: 70.7
2464
Female, age 72, unknown
91.0
1831
Male, age 72, unknown
84.9
1840
Male, age 53, unknown
58.2
2850
Male, age 76, both hemispheres
48.7
Periaquaductal grey, lateral nTPM: 71.9
2053
Male, age 18, unknown
87.8
2272
Male, age 74, both hemispheres
76.4
2140
Male, age 76, both hemispheres
51.6
Pretectal area nTPM: 93.4
1815
Male, age 53, unknown
112.4
2007
Male, age 72, unknown
112.1
2407
Male, age 75, both hemispheres
107.9
1816
Male, age 51, unknown
104.1
1817
Female, age 42, unknown
100.9
1944
Female, age 72, unknown
97.0
2316
Male, age 76, right hemisphere
87.7
2825
Male, age 18, unknown
80.6
2224
Female, age 72, unknown
77.2
2667
Female, age 75, unknown
76.6
2273
Male, age 74, both hemispheres
70.6
Red nucleus nTPM: 111.3
1821
Female, age 72, unknown
122.1
1865
Male, age 51, unknown
121.2
1904
Male, age 53, unknown
118.9
2588
Male, age 74, left hemisphere
117.2
2503
Female, age 72, unknown
115.9
2785
Male, age 18, unknown
111.5
1954
Female, age 42, unknown
110.5
2823
Male, age 76, right hemisphere
109.3
2227
Male, age 72, unknown
103.7
2769
Male, age 72, unknown
103.0
2725
Female, age 75, unknown
102.5
2584
Male, age 75, left hemisphere
99.9
Substantia nigra nTPM: 98.4
2590
Female, age 75, unknown
113.0
2583
Male, age 75, right hemisphere
111.0
2409
Female, age 72, unknown
105.9
2241
Male, age 72, unknown
103.8
1851
Male, age 51, unknown
103.3
1889
Female, age 72, unknown
103.0
1941
Male, age 53, unknown
98.1
1916
Female, age 42, unknown
88.3
2665
Male, age 74, both hemispheres
83.5
2699
Male, age 18, unknown
73.9
Superior colliculus nTPM: 102.8
2668
Female, age 75, unknown
118.9
1913
Female, age 42, unknown
114.2
2261
Male, age 18, unknown
113.9
1895
Male, age 76, right hemisphere
107.8
2587
Male, age 74, left hemisphere
103.0
1995
Male, age 72, unknown
102.4
1796
Male, age 53, unknown
94.8
2087
Female, age 72, unknown
94.2
2664
Male, age 75, both hemispheres
90.2
1839
Male, age 51, unknown
88.4
Ventral tegmental area nTPM: 92.9
2410
Female, age 72, unknown
121.1
2218
Male, age 76, both hemispheres
90.4
1915
Female, age 42, unknown
90.1
1942
Male, age 51, unknown
89.7
2223
Female, age 72, unknown
87.6
2021
Male, age 53, unknown
78.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
58.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 58.3
Samples: 139
Max nTPM: 214.4
Min nTPM: 24.3
Std nTPM: 24.7
Median nTPM: 52.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
214.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
143.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
108.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
108.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
107.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
105.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
103.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
100.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
98.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
97.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
94.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
89.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
88.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
88.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
87.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
86.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
85.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
85.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
84.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
80.2
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
79.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
79.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
78.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
78.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
77.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
75.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
73.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
73.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
72.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
72.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
72.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
71.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
71.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
67.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
67.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
66.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
65.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
65.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
64.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
63.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
63.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
63.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
62.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
61.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
61.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
61.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
61.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
61.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
60.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
60.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
60.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
60.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
60.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
60.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
60.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
59.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
59.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
58.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
58.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
58.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
58.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
57.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
56.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
54.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
54.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
53.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
53.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
53.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
52.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
52.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
52.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
51.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
51.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
51.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
51.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
51.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
50.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
50.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
50.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
50.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
50.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
49.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
49.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
48.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
48.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
48.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
47.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
47.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
47.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
47.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
46.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
46.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
45.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
45.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
45.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
45.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
45.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
45.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
45.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
44.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
44.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
43.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
42.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
42.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
42.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
41.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
41.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
41.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
40.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
40.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
40.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
39.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
39.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
39.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
39.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
38.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
38.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
37.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
37.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
36.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
36.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
35.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
34.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
33.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
33.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
33.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
33.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
32.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
32.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
32.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
32.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
32.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
31.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
29.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
27.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
27.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
25.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
25.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
24.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
47.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 47.7
Samples: 4
Max nTPM: 50.0
Min nTPM: 45.0
Sample A
Male
45.0
Sample B
Male
47.2
Sample C
Female
48.7
Sample D
Female
50.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.