PUBLICATION DATA


1 Antibody Response Data.
Results from 12634 immunizations using different Protein Epitope Signature Tags (PrEST) as antigens to generate monospecific antibodies. The result is given as amount (mg) specific antibody obtained after immunization and affinity purification using the same specific protein fragment (PrEST) as antigen and purification partner. The comma-separated file includes: antigen id, antibody id, antigen sequence and antibody amount (mg).
Related to publication:
Rockberg J, UhlÚn M.
Prediction of antibody response using recombinant human protein fragments as antigen.
Protein Sci. 2009 18(11):2346-55.
antibodyresponse.csv.zip
CSV-file, 927.7 KB
 
2 TMA expression data.
Expression profiles for proteins based on immunohistochemisty using tissue micro arrays. The comma-separated file includes antibody identifier (hpa_id), Ensembl gene identifier (ensembl_gene_id), tissue name, intensity, fraction and the summary expression value. The data is based on The Human Protein Atlas version 4.1 and Ensembl version 54.36.
Related to publication:
PontÚn F, Gry M, Fagerberg L, Lundberg E, Asplund A, Berglund L, Oksvold P, Bj÷rling E, Hober S, Kampf C, Navani S, Nilsson P, Ottosson J, Persson A, WernÚrus H, Wester K, UhlÚn M.
A global view of protein expression in human cells, tissues, and organs.
Mol Syst Biol. 2009 5:337.
expression_data.TMA.csv.zip
CSV-file, 1.7 MB
 
3 CMA expression data.
Expression profiles for proteins based on immunohistochemisty using cell micro arrays. The comma-separated file includes antibody identifier (hpa_id), Ensembl gene identifier (ensembl_gene_id), name of cell line (celline) and the summary expression value in that cell line (summary_expression_value). The data is based on The Human Protein Atlas version 4.1 and Ensembl version 54.36.
Related to publication:
PontÚn F, Gry M, Fagerberg L, Lundberg E, Asplund A, Berglund L, Oksvold P, Bj÷rling E, Hober S, Kampf C, Navani S, Nilsson P, Ottosson J, Persson A, WernÚrus H, Wester K, UhlÚn M.
A global view of protein expression in human cells, tissues, and organs.
Mol Syst Biol. 2009 5:337.
expression_data.CMA.csv.zip
CSV-file, 892.2 KB
 
4 IF expression data.
Expression profiles for proteins based on immunofluorescently stained cells. The comma-separated file includes antibody identifier (hpa_id), Ensembl gene identifier (ensembl_gene_id), name of cell line (celline) and the summary expression value in that cell line (summary_expression_value). The data is based on The Human Protein Atlas version 4.1 and Ensembl version 54.36.
Related to publication:
PontÚn F, Gry M, Fagerberg L, Lundberg E, Asplund A, Berglund L, Oksvold P, Bj÷rling E, Hober S, Kampf C, Navani S, Nilsson P, Ottosson J, Persson A, WernÚrus H, Wester K, UhlÚn M.
A global view of protein expression in human cells, tissues, and organs.
Mol Syst Biol. 2009 5:337.
expression_data.IF.csv.zip
CSV-file, 32.5 KB
 
5 RNA isoform data
RNA levels in 32 tissues based on RNA-seq. The tab-separated file includes Ensembl gene identifier ("Gene"), Ensembl transcript identifier ("Transcript"), analysed sample ("Sample") and fragments per kilobase of transcript per million fragments mapped ("FPKM"). The data is based on The Human Protein Atlas version version 13 and Ensembl version 75.37.
Related to publication:
UhlÚn M, Fagerberg L, Hallstr÷m BM, Lindskog C, Oksvold P, Mardinoglu A, Sivertsson ┼, Kampf C, Sj÷stedt E, Asplund A, Olsson I, Edlund K, Lundberg E, Navani S, Szigyarto CA, Odeberg J, Djureinovic D, Takanen JO, Hober S, Alm T, Edqvist PH, Berling H, Tegel H, Mulder J, Rockberg J, Nilsson P, Schwenk JM, Hamsten M, von Feilitzen K, Forsberg M, Persson L, Johansson F, Zwahlen M, von Heijne G, Nielsen J, PontÚn F.
Tissue-based map of the human proteome.
Science 2015 347(6220):1260419.
rna_transcript.tsv.gz
TSV-file, 56.3 MB