DOWNLOADABLE DATA


1 Normal tissue data
Expression profiles for proteins in human tissues based on immunohistochemisty using tissue micro arrays. The comma-separated file includes Ensembl gene identifier ("Gene"), tissue name ("Tissue"), annotated cell type ("Cell type"), expression value ("Level"), the type of annotation (annotated protein expression (APE), based on more than one antibody, or staining, based on one antibody only) ("Expression type"), and the reliability or validation of the expression value ("Reliability"). The data is based on The Human Protein Atlas version 12 and Ensembl version 73.37.
normal_tissue.csv.zip
CSV-file, 5.3 MB
 
2 Cancer tumor data
Staining profiles for proteins in human tumor tissue based on immunohistochemisty using tissue micro arrays. The comma-separated file includes Ensembl gene identifier ("Gene"), tumor name ("Tumor"), staining value ("Level"), the number of patients that stain for this staining value ("Count patients"), the total amount of patients for this tumor type ("Total patients") and the type of annotation staining ("Expression type"). The data is based on The Human Protein Atlas version 12 and Ensembl version 73.37.
cancer.csv.zip
CSV-file, 5.2 MB
 
3 Subcellular location data
Subcellular localization of proteins based on immunofluorescently stained cells. The comma-separated file includes Ensembl gene identifier ("Gene"), main subcellular location of the protein ("Main location"), other locations ("Other location"), the type of annotation (annotated protein expression (APE), based on more than one antibody, or staining, based on one antibody only) ("Expression type"), and the reliability or validation of the expression value ("Reliability"). The data is based on The Human Protein Atlas version 12 and Ensembl version 73.37.
subcellular_location.csv.zip
CSV-file, 43.5 KB
 
4 RNA data
RNA levels in 44 cell lines and 27 tissues based on RNAseq. The comma-separated file includes Ensembl gene identifier ("Gene"), analysed cell line ("Cell line"), fragments per kilobase of transcript per million fragments mapped ("FPKM"), and abundance class ("Abundance"). The data is based on The Human Protein Atlas version 12 and Ensembl version 73.37.


rna.csv.zip
CSV-file, 7.4 MB
 
5 Data from the Human Protein Atlas in XML format
The XML file contains most of the data in the Human Protein Atlas version 12, including protein expression data (in normal and tumor tissues and in cell lines), antigen sequences, Western blot data for antibodies, protein array data for antibodies, RNA-Seq data, external references such as UniProt identifiers, and more. The data is based on Ensembl version 73.37. The file structure is presented in the XSD-schema. This data can also be downloaded for a resulting gene set when using the search function (via the xml link on the result page).
proteinatlas.xml.bz2
XML-file, 115.8 MB