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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
13.0
nTPM
HPA Brain:
56.1
nTPM
GTEx:
13.0
nTPM
FANTOM5:
1.1
Scaled Tags Per Million
Pig:
68.1
nTPM
Mouse:
86.0
nTPM
Allen mouse:
12.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
56.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 29.7
2219
Male, age 76, both hemispheres
42.5
1827
Male, age 72, unknown
36.9
2666
Male, age 74, left hemisphere
34.6
2411
Female, age 72, unknown
32.0
2019
Male, age 18, unknown
29.8
1870
Female, age 42, unknown
27.2
2586
Male, age 75, left hemisphere
26.5
2828
Female, age 72, unknown
26.3
1833
Male, age 53, unknown
21.4
1830
Male, age 51, unknown
19.5
Dorsal raphe nucleus nTPM: 29.1
2298
Female, age 72, unknown
39.5
2750
Male, age 76, both hemispheres
33.4
2047
Male, age 72, unknown
32.6
1828
Male, age 53, unknown
22.6
2016
Female, age 72, unknown
17.1
Inferior colliculus nTPM: 30.1
2097
Female, age 72, unknown
38.9
1890
Male, age 53, unknown
30.8
1848
Female, age 42, unknown
27.7
2849
Male, age 72, unknown
22.9
Median raphe nucleus nTPM: 56.1
2220
Male, age 76, midline
56.1
Periaquaductal grey, anterior nTPM: 36.5
1795
Male, age 51, unknown
42.0
1947
Male, age 18, unknown
38.3
2502
Female, age 75, unknown
29.2
Periaquaductal grey, dorsal nTPM: 26.8
1831
Male, age 72, unknown
30.7
2850
Male, age 76, both hemispheres
28.7
1840
Male, age 53, unknown
26.3
2464
Female, age 72, unknown
21.4
Periaquaductal grey, lateral nTPM: 20.7
2053
Male, age 18, unknown
26.8
2140
Male, age 76, both hemispheres
20.9
2272
Male, age 74, both hemispheres
14.3
Pretectal area nTPM: 38.4
1816
Male, age 51, unknown
57.6
1817
Female, age 42, unknown
54.6
2007
Male, age 72, unknown
54.2
1944
Female, age 72, unknown
50.0
2667
Female, age 75, unknown
47.4
1815
Male, age 53, unknown
46.1
2224
Female, age 72, unknown
35.1
2825
Male, age 18, unknown
27.8
2316
Male, age 76, right hemisphere
21.3
2407
Male, age 75, both hemispheres
15.9
2273
Male, age 74, both hemispheres
12.5
Red nucleus nTPM: 22.3
2588
Male, age 74, left hemisphere
28.7
1821
Female, age 72, unknown
27.3
2785
Male, age 18, unknown
26.2
2584
Male, age 75, left hemisphere
24.1
1954
Female, age 42, unknown
23.1
2725
Female, age 75, unknown
21.9
2823
Male, age 76, right hemisphere
21.7
1904
Male, age 53, unknown
19.7
2503
Female, age 72, unknown
19.6
2769
Male, age 72, unknown
19.1
1865
Male, age 51, unknown
19.0
2227
Male, age 72, unknown
17.6
Substantia nigra nTPM: 39.1
2665
Male, age 74, both hemispheres
64.5
1941
Male, age 53, unknown
51.0
1889
Female, age 72, unknown
48.0
1916
Female, age 42, unknown
46.6
2241
Male, age 72, unknown
38.8
1851
Male, age 51, unknown
38.1
2409
Female, age 72, unknown
32.9
2583
Male, age 75, right hemisphere
25.9
2590
Female, age 75, unknown
23.9
2699
Male, age 18, unknown
21.6
Superior colliculus nTPM: 27.3
2087
Female, age 72, unknown
40.4
2668
Female, age 75, unknown
36.6
2261
Male, age 18, unknown
32.3
1895
Male, age 76, right hemisphere
31.9
1796
Male, age 53, unknown
31.5
1839
Male, age 51, unknown
24.1
1913
Female, age 42, unknown
21.2
2664
Male, age 75, both hemispheres
20.0
2587
Male, age 74, left hemisphere
18.1
1995
Male, age 72, unknown
16.9
Ventral tegmental area nTPM: 33.9
2410
Female, age 72, unknown
44.3
2218
Male, age 76, both hemispheres
38.8
1915
Female, age 42, unknown
36.6
1942
Male, age 51, unknown
30.7
2021
Male, age 53, unknown
26.9
2223
Female, age 72, unknown
25.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
13.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 13.0
Samples: 139
Max nTPM: 81.1
Min nTPM: 0.1
Std nTPM: 14.0
Median nTPM: 7.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
81.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
74.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
53.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
49.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
42.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
40.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
39.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
39.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
37.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
34.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
32.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
31.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
30.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
29.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
29.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
28.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
27.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
26.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
26.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
25.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
25.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
25.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
25.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
25.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
24.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
24.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
23.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
23.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
22.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
22.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
21.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
21.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
21.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
21.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
20.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
20.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
18.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
17.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
17.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
17.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
17.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
17.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
16.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
16.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
16.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
15.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
15.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
15.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
15.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
15.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
14.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
14.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
13.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
13.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
13.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
13.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
12.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
12.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
11.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
11.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
11.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
11.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
10.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
10.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
9.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
9.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
9.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
9.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
7.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
7.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
6.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
6.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
6.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
6.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
6.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
6.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
6.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
6.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
5.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
5.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
5.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
5.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
5.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
4.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
4.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
4.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
4.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
4.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
4.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
4.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
4.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
3.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
3.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
3.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
3.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
3.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
3.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
3.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
3.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
3.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
3.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
3.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
3.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
2.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
2.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
2.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
2.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
2.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
2.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
2.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
1.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
1.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
0.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
0.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
0.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
0.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
0.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
0.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
0.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
0.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
0.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
0.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
0.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
86.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 86.0
Samples: 4
Max nTPM: 90.6
Min nTPM: 81.3
Sample A
Male
81.3
Sample B
Male
83.4
Sample C
Female
88.8
Sample D
Female
90.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.