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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1348.1
nTPM
HPA Brain:
2211.9
nTPM
GTEx:
1348.1
nTPM
FANTOM5:
2100.2
Scaled Tags Per Million
Pig:
2327.8
nTPM
Mouse:
1083.7
nTPM
Allen mouse:
25.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA041264
Antibody HPA041271
Antibody CAB002621
Glial cells
Not detected
Not detected
Medium
Neuronal cells
Medium
Not detected
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
2211.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 1917.3
1898
Male, age 80, left hemisphere
2296.4
2621
Female, age 67, right hemisphere
2114.3
1855
Male, age 76, left hemisphere
2077.1
1911
Female, age 85, right hemisphere
1857.0
2529
Female, age 94, left hemisphere
1603.9
2148
Female, age 91, left hemisphere
1555.1
Dentate gyrus nTPM: 1948.4
2530
Female, age 94, left hemisphere
2677.2
2010
Male, age 76, both hemispheres
2317.2
1927
Female, age 91, both hemispheres
1990.5
2246
Female, age 85, both hemispheres
1790.4
2528
Male, age 74, both hemispheres
1551.1
2531
Female, age 67, both hemispheres
1364.1
Entorhinal gyrus nTPM: 1686.5
1938
Female, age 85, left hemisphere
1896.2
2764
Male, age 80, right hemisphere
1881.0
1787
Male, age 76, left hemisphere
1748.1
2117
Female, age 91, right hemisphere
1746.5
2613
Female, age 94, left hemisphere
1705.9
2686
Male, age 75, right hemisphere
1141.2
Hippocampus, CA1 nTPM: 2211.9
2749
Male, age 80, left hemisphere
4028.6
1873
Female, age 85, both hemispheres
1983.0
2045
Male, age 76, both hemispheres
1774.0
2527
Male, age 74, both hemispheres
1742.7
2082
Female, age 91, right hemisphere
1530.9
Hippocampus, CA2 nTPM: 1980.0
1963
Male, age 80, left hemisphere
2631.3
1892
Male, age 76, both hemispheres
2091.0
2249
Male, age 74, both hemispheres
1914.7
2437
Female, age 94, left hemisphere
1859.0
1940
Female, age 85, left hemisphere
1755.2
2113
Female, age 91, right hemisphere
1628.8
Hippocampus, CA3 nTPM: 1916.5
2137
Male, age 80, left hemisphere
3314.5
1867
Male, age 76, both hemispheres
2110.4
2436
Male, age 74, both hemispheres
1699.0
2620
Female, age 94, left hemisphere
1543.5
1891
Female, age 85, both hemispheres
1523.6
2861
Female, age 67, both hemispheres
1308.1
Parahippocampal cortex nTPM: 1703.6
2250
Female, age 67, right hemisphere
2156.0
2245
Female, age 91, both hemispheres
2115.1
2532
Female, age 72, left hemisphere
1898.1
2018
Male, age 76, both hemispheres
1818.9
1933
Female, age 85, both hemispheres
1781.2
1850
Male, age 80, both hemispheres
1751.8
1990
Female, age 91, right hemisphere
1696.4
2693
Female, age 94, both hemispheres
1432.3
2692
Male, age 74, both hemispheres
1267.7
2622
Female, age 67, right hemisphere
1118.5
Perirhinal gyrus nTPM: 1919.9
2521
Female, age 94, right hemisphere
2051.4
1794
Male, age 80, right hemisphere
2031.3
1847
Female, age 91, left hemisphere
1967.7
1841
Female, age 85, right hemisphere
1958.5
2848
Male, age 76, right hemisphere
1590.4
Subiculum nTPM: 1829.8
2042
Male, age 76, both hemispheres
2203.9
1901
Male, age 80, both hemispheres
2192.9
1977
Female, age 85, both hemispheres
1891.4
2438
Female, age 94, left hemisphere
1682.1
2729
Female, age 91, right hemisphere
1573.6
2619
Male, age 74, both hemispheres
1434.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
1348.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 1348.1
Samples: 197
Max nTPM: 2892.3
Min nTPM: 610.8
Std nTPM: 459.3
Median nTPM: 1224.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
2892.3
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
2771.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
2644.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
2491.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
2458.2
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
2449.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
2425.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
2422.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
2420.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
2396.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
2384.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
2354.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
2283.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
2255.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
2104.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
2091.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
2079.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
2067.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
2043.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
2029.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
1965.7
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
1927.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
1918.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
1916.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
1899.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
1898.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
1890.8
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
1833.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
1831.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
1815.8
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
1810.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
1801.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
1798.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
1792.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
1783.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
1750.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
1733.8
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
1731.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
1731.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
1715.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
1714.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
1699.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
1698.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
1684.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
1668.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
1650.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
1636.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
1630.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
1614.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
1610.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
1608.9
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
1578.5
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
1577.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
1573.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
1561.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
1537.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
1524.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
1517.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
1510.3
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
1491.5
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
1488.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
1481.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
1479.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
1475.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
1467.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
1467.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
1439.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
1426.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
1424.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
1418.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
1387.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
1384.1
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
1382.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
1375.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
1365.0
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
1360.5
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
1342.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
1342.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
1338.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
1327.7
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
1324.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
1305.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
1304.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
1296.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
1294.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
1292.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
1281.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
1276.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
1272.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
1261.2
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
1257.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
1254.8
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
1249.4
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
1246.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
1244.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
1237.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
1231.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
1225.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
1224.1
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
1223.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
1213.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
1209.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
1209.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
1204.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
1173.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
1169.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
1157.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
1152.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
1150.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
1150.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
1149.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
1139.8
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
1138.9
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
1137.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
1130.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
1127.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
1121.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
1119.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
1115.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
1112.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
1112.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
1107.9
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
1105.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
1102.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
1099.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
1098.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
1096.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
1095.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
1086.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
1085.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
1082.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
1080.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
1079.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
1075.1
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
1069.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
1064.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
1056.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
1053.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
1051.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
1050.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
1048.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
1037.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
1034.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
1031.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
1027.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
1026.1
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
1020.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
1015.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
1010.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
1004.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
1002.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
1002.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
999.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
996.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
996.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
994.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
993.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
986.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
975.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
971.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
970.0
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
964.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
964.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
959.7
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
956.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
946.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
914.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
910.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
909.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
900.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
899.2
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
895.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
889.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
882.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
879.9
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
862.5
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
855.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
852.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
843.0
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
841.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
840.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
840.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
830.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
830.1
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
827.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
824.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
813.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
807.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
807.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
806.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
804.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
774.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
763.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
762.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
727.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
714.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
610.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
1083.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 769.8
Samples: 4
Max nTPM: 801.2
Min nTPM: 723.1
Sample A
Male
787.0
Sample B
Male
723.1
Sample C
Female
767.9
Sample D
Female
801.2
Hippocampal formation nTPM: 1083.7
Samples: 4
Max nTPM: 1188.8
Min nTPM: 1040.1
Sample A
Male
1040.1
Sample B
Male
1057.7
Sample C
Female
1188.8
Sample D
Female
1048.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.