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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
65.2
nTPM
HPA Brain:
76.5
nTPM
GTEx:
65.2
nTPM
FANTOM5:
27.4
Scaled Tags Per Million
Pig:
81.0
nTPM
Mouse:
48.5
nTPM
Allen mouse:
4.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
76.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 50.7
2019
Male, age 18, unknown
75.8
2586
Male, age 75, left hemisphere
73.2
2219
Male, age 76, both hemispheres
65.2
2666
Male, age 74, left hemisphere
49.6
2411
Female, age 72, unknown
47.3
2828
Female, age 72, unknown
43.2
1870
Female, age 42, unknown
39.6
1827
Male, age 72, unknown
39.2
1830
Male, age 51, unknown
37.8
1833
Male, age 53, unknown
36.1
Dorsal raphe nucleus nTPM: 56.6
2298
Female, age 72, unknown
65.8
2047
Male, age 72, unknown
62.6
2750
Male, age 76, both hemispheres
57.5
1828
Male, age 53, unknown
55.2
2016
Female, age 72, unknown
41.8
Inferior colliculus nTPM: 31.4
1890
Male, age 53, unknown
34.7
2097
Female, age 72, unknown
32.1
2849
Male, age 72, unknown
30.3
1848
Female, age 42, unknown
28.3
Median raphe nucleus nTPM: 76.5
2220
Male, age 76, midline
76.5
Periaquaductal grey, anterior nTPM: 42.1
1795
Male, age 51, unknown
55.2
2502
Female, age 75, unknown
43.1
1947
Male, age 18, unknown
27.9
Periaquaductal grey, dorsal nTPM: 38.3
1831
Male, age 72, unknown
43.0
1840
Male, age 53, unknown
42.4
2464
Female, age 72, unknown
35.6
2850
Male, age 76, both hemispheres
32.3
Periaquaductal grey, lateral nTPM: 32.0
2272
Male, age 74, both hemispheres
33.6
2140
Male, age 76, both hemispheres
32.5
2053
Male, age 18, unknown
29.9
Pretectal area nTPM: 48.9
1817
Female, age 42, unknown
78.9
2007
Male, age 72, unknown
69.5
1815
Male, age 53, unknown
57.1
1944
Female, age 72, unknown
52.8
2224
Female, age 72, unknown
50.5
1816
Male, age 51, unknown
48.3
2667
Female, age 75, unknown
40.2
2407
Male, age 75, both hemispheres
39.1
2825
Male, age 18, unknown
38.5
2273
Male, age 74, both hemispheres
32.2
2316
Male, age 76, right hemisphere
30.7
Red nucleus nTPM: 38.3
2785
Male, age 18, unknown
65.3
2584
Male, age 75, left hemisphere
54.9
2588
Male, age 74, left hemisphere
44.0
2725
Female, age 75, unknown
38.7
1821
Female, age 72, unknown
35.5
2769
Male, age 72, unknown
34.7
2503
Female, age 72, unknown
33.8
2227
Male, age 72, unknown
33.6
1904
Male, age 53, unknown
31.9
1865
Male, age 51, unknown
30.1
1954
Female, age 42, unknown
29.3
2823
Male, age 76, right hemisphere
27.5
Substantia nigra nTPM: 72.4
2665
Male, age 74, both hemispheres
116.6
1851
Male, age 51, unknown
95.2
1916
Female, age 42, unknown
92.4
2699
Male, age 18, unknown
69.8
1941
Male, age 53, unknown
67.9
2241
Male, age 72, unknown
66.1
2409
Female, age 72, unknown
65.7
1889
Female, age 72, unknown
54.4
2583
Male, age 75, right hemisphere
52.7
2590
Female, age 75, unknown
43.4
Superior colliculus nTPM: 41.7
2668
Female, age 75, unknown
67.6
2664
Male, age 75, both hemispheres
58.1
2087
Female, age 72, unknown
48.8
1796
Male, age 53, unknown
42.4
2587
Male, age 74, left hemisphere
37.1
1839
Male, age 51, unknown
36.0
1995
Male, age 72, unknown
34.1
1913
Female, age 42, unknown
33.8
1895
Male, age 76, right hemisphere
31.8
2261
Male, age 18, unknown
27.4
Ventral tegmental area nTPM: 61.6
1915
Female, age 42, unknown
71.7
2410
Female, age 72, unknown
67.5
2021
Male, age 53, unknown
62.7
2218
Male, age 76, both hemispheres
60.9
1942
Male, age 51, unknown
56.4
2223
Female, age 72, unknown
50.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
65.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 65.2
Samples: 139
Max nTPM: 163.4
Min nTPM: 20.0
Std nTPM: 28.2
Median nTPM: 63.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
163.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
163.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
153.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
130.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
126.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
124.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
124.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
121.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
119.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
102.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
102.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
100.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
99.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
97.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
97.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
95.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
95.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
95.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
95.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
94.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
92.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
91.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
91.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
90.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
88.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
87.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
85.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
85.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
85.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
83.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
82.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
82.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
82.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
81.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
81.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
81.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
81.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
79.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
78.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
78.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
78.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
78.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
76.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
76.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
75.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
74.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
74.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
73.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
72.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
71.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
71.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
71.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
71.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
71.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
71.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
70.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
70.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
69.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
69.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
68.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
66.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
66.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
65.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
65.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
65.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
65.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
64.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
63.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
63.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
63.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
62.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
61.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
61.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
60.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
59.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
58.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
58.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
58.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
56.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
55.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
54.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
54.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
53.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
52.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
52.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
52.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
51.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
51.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
51.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
50.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
50.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
49.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
49.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
48.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
47.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
47.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
46.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
46.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
45.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
44.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
44.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
44.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
44.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
43.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
43.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
42.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
41.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
41.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
41.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
40.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
40.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
39.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
39.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
39.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
39.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
38.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
38.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
38.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
37.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
36.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
35.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
35.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
34.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
34.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
33.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
32.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
32.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
30.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
30.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
30.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
29.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
29.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
28.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
27.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
27.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
26.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
26.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
20.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
20.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
48.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 48.5
Samples: 4
Max nTPM: 52.1
Min nTPM: 45.7
Sample A
Male
52.1
Sample B
Male
45.7
Sample C
Female
46.9
Sample D
Female
49.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.