DARS

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:29.7 FPKM
GTEx:21.0 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:High

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA020451

 

Antibody HPA029804

 

Antibody HPA029805

 

Endothelial cells

Low   Medium   Low  

Glandular cells

High   High   High  

Peripheral nerve/ganglion

Medium   High   High  
     
     
     

COLON - HPA RNA-seq

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Average FPKM

29.7

overview Male, age 54
Sample 1
FPKM: 22.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 31.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 25.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 22.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 28.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 43.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 33.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

21.0

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 23.3
Samples: 149

Max RPKM: 39.1
Min RPKM: 14.2
Std RPKM: 3.8
Median RPKM: 22.7
GTEX-WI4N-2226-SM-4OOS9 39.1
GTEX-13FH7-1626-SM-5J2O9 32.8
GTEX-145ME-1126-SM-5SIAT 32.6
GTEX-148VJ-2426-SM-5NQ9Y 32.1
GTEX-13SLW-2826-SM-5Q5ES 31.7
GTEX-13O1R-2426-SM-5KLZZ 31.0
GTEX-WHPG-1626-SM-4M1ZL 30.6
GTEX-13G51-2126-SM-5IJD9 30.6
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 18.7
Samples: 196

Max RPKM: 37
Min RPKM: 6.6
Std RPKM: 5.3
Median RPKM: 17.2
GTEX-ZV6S-1226-SM-59HLH 37.0
GTEX-ZYVF-2826-SM-5GIDK 35.0
GTEX-148VJ-2626-SM-5QGPI 30.8
GTEX-T6MO-0826-SM-4DM51 29.9
GTEX-TKQ1-0626-SM-4DXTS 29.5
GTEX-11P81-1126-SM-5GU5G 29.3
GTEX-X5EB-0926-SM-46MVT 28.9
GTEX-11TTK-2426-SM-5PNYO 28.8
Show all