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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
115.5
nTPM
HPA Brain:
357.3
nTPM
GTEx:
115.5
nTPM
FANTOM5:
180.9
Scaled Tags Per Million
Mouse:
7.9
nTPM
Allen mouse:
4.7
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
357.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 253.9
2586
Male, age 75, left hemisphere
334.9
2828
Female, age 72, unknown
291.8
2666
Male, age 74, left hemisphere
275.1
2411
Female, age 72, unknown
256.3
1870
Female, age 42, unknown
247.1
1830
Male, age 51, unknown
241.7
1833
Male, age 53, unknown
240.4
1827
Male, age 72, unknown
229.8
2219
Male, age 76, both hemispheres
229.0
2019
Male, age 18, unknown
193.0
Dorsal raphe nucleus nTPM: 259.2
2750
Male, age 76, both hemispheres
317.5
2298
Female, age 72, unknown
260.7
2016
Female, age 72, unknown
254.4
2047
Male, age 72, unknown
244.3
1828
Male, age 53, unknown
219.4
Inferior colliculus nTPM: 241.1
2849
Male, age 72, unknown
269.0
2097
Female, age 72, unknown
252.6
1848
Female, age 42, unknown
243.1
1890
Male, age 53, unknown
199.5
Median raphe nucleus nTPM: 246.6
2220
Male, age 76, midline
246.6
Periaquaductal grey, anterior nTPM: 357.3
2502
Female, age 75, unknown
401.6
1795
Male, age 51, unknown
375.1
1947
Male, age 18, unknown
295.3
Periaquaductal grey, dorsal nTPM: 235.7
2850
Male, age 76, both hemispheres
268.2
2464
Female, age 72, unknown
237.0
1840
Male, age 53, unknown
230.6
1831
Male, age 72, unknown
206.9
Periaquaductal grey, lateral nTPM: 280.7
2140
Male, age 76, both hemispheres
309.3
2272
Male, age 74, both hemispheres
271.4
2053
Male, age 18, unknown
261.4
Pretectal area nTPM: 259.7
2316
Male, age 76, right hemisphere
313.4
2224
Female, age 72, unknown
290.8
2825
Male, age 18, unknown
279.4
2007
Male, age 72, unknown
260.0
2407
Male, age 75, both hemispheres
258.8
2667
Female, age 75, unknown
257.8
2273
Male, age 74, both hemispheres
256.1
1816
Male, age 51, unknown
247.1
1815
Male, age 53, unknown
241.8
1817
Female, age 42, unknown
232.4
1944
Female, age 72, unknown
219.1
Red nucleus nTPM: 231.4
2785
Male, age 18, unknown
286.2
2584
Male, age 75, left hemisphere
269.6
2227
Male, age 72, unknown
269.2
2769
Male, age 72, unknown
263.4
2503
Female, age 72, unknown
236.9
1904
Male, age 53, unknown
232.8
2588
Male, age 74, left hemisphere
227.6
2823
Male, age 76, right hemisphere
213.8
1865
Male, age 51, unknown
208.3
2725
Female, age 75, unknown
203.8
1954
Female, age 42, unknown
202.2
1821
Female, age 72, unknown
162.9
Substantia nigra nTPM: 170.1
2583
Male, age 75, right hemisphere
230.5
1889
Female, age 72, unknown
202.5
1941
Male, age 53, unknown
186.7
1851
Male, age 51, unknown
170.8
2699
Male, age 18, unknown
168.5
2590
Female, age 75, unknown
167.2
2665
Male, age 74, both hemispheres
166.2
1916
Female, age 42, unknown
165.6
2241
Male, age 72, unknown
144.7
2409
Female, age 72, unknown
98.3
Superior colliculus nTPM: 268.5
2664
Male, age 75, both hemispheres
337.1
1796
Male, age 53, unknown
329.6
2261
Male, age 18, unknown
323.8
1839
Male, age 51, unknown
266.1
2668
Female, age 75, unknown
261.8
1995
Male, age 72, unknown
260.0
1913
Female, age 42, unknown
259.8
2087
Female, age 72, unknown
227.2
2587
Male, age 74, left hemisphere
217.2
1895
Male, age 76, right hemisphere
201.8
Ventral tegmental area nTPM: 231.2
2223
Female, age 72, unknown
261.9
2021
Male, age 53, unknown
258.8
1942
Male, age 51, unknown
251.3
2218
Male, age 76, both hemispheres
222.7
1915
Female, age 42, unknown
202.8
2410
Female, age 72, unknown
189.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
115.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 115.5
Samples: 139
Max nTPM: 236.2
Min nTPM: 42.7
Std nTPM: 41.7
Median nTPM: 108.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
236.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
221.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
219.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
211.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
207.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
200.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
196.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
195.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
195.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
194.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
190.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
189.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
186.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
169.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
168.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
167.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
165.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
164.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
161.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
160.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
160.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
160.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
158.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
156.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
156.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
155.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
154.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
151.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
150.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
150.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
149.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
148.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
148.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
147.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
146.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
141.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
138.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
137.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
135.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
134.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
133.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
132.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
131.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
131.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
131.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
130.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
128.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
127.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
127.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
127.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
125.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
125.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
124.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
124.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
120.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
118.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
117.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
117.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
116.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
114.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
113.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
113.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
112.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
111.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
111.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
111.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
110.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
108.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
108.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
108.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
107.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
105.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
104.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
103.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
102.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
102.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
102.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
101.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
101.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
100.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
100.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
98.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
98.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
98.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
97.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
96.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
95.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
95.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
94.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
93.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
91.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
91.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
91.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
90.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
88.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
88.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
87.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
86.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
86.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
84.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
83.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
83.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
83.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
83.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
83.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
82.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
81.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
81.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
81.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
81.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
79.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
78.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
77.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
77.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
76.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
75.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
75.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
74.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
73.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
73.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
71.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
71.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
70.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
69.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
68.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
66.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
66.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
64.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
64.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
62.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
62.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
60.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
58.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
58.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
57.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
57.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
55.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
49.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
42.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
7.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 7.9
Samples: 4
Max nTPM: 12.1
Min nTPM: 5.8
Sample A
Male
12.1
Sample B
Male
7.3
Sample C
Female
5.8
Sample D
Female
6.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.