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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
128.6
nTPM
HPA Brain:
87.3
nTPM
GTEx:
128.6
nTPM
FANTOM5:
63.4
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA042715
Glial cells
Not detected
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
87.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 85.1
1898
Male, age 80, left hemisphere
96.6
1855
Male, age 76, left hemisphere
91.2
2529
Female, age 94, left hemisphere
87.9
2621
Female, age 67, right hemisphere
80.6
2148
Female, age 91, left hemisphere
78.4
1911
Female, age 85, right hemisphere
76.1
Dentate gyrus nTPM: 82.9
1927
Female, age 91, both hemispheres
88.1
2530
Female, age 94, left hemisphere
87.9
2010
Male, age 76, both hemispheres
87.7
2528
Male, age 74, both hemispheres
86.9
2246
Female, age 85, both hemispheres
74.4
2531
Female, age 67, both hemispheres
72.3
Entorhinal gyrus nTPM: 75.1
2117
Female, age 91, right hemisphere
84.4
2764
Male, age 80, right hemisphere
81.5
1938
Female, age 85, left hemisphere
78.7
1787
Male, age 76, left hemisphere
78.5
2686
Male, age 75, right hemisphere
67.6
2613
Female, age 94, left hemisphere
60.0
Hippocampus, CA1 nTPM: 86.7
2749
Male, age 80, left hemisphere
104.5
2045
Male, age 76, both hemispheres
91.9
1873
Female, age 85, both hemispheres
82.1
2527
Male, age 74, both hemispheres
80.5
2082
Female, age 91, right hemisphere
74.7
Hippocampus, CA2 nTPM: 82.9
1892
Male, age 76, both hemispheres
89.8
1963
Male, age 80, left hemisphere
89.0
2249
Male, age 74, both hemispheres
87.1
2437
Female, age 94, left hemisphere
80.0
1940
Female, age 85, left hemisphere
79.4
2113
Female, age 91, right hemisphere
72.3
Hippocampus, CA3 nTPM: 87.3
2436
Male, age 74, both hemispheres
117.1
2137
Male, age 80, left hemisphere
89.6
1867
Male, age 76, both hemispheres
84.2
2861
Female, age 67, both hemispheres
83.2
2620
Female, age 94, left hemisphere
76.9
1891
Female, age 85, both hemispheres
72.9
Parahippocampal cortex nTPM: 73.0
2018
Male, age 76, both hemispheres
80.4
2250
Female, age 67, right hemisphere
80.2
1933
Female, age 85, both hemispheres
75.8
2245
Female, age 91, both hemispheres
75.8
1850
Male, age 80, both hemispheres
73.9
1990
Female, age 91, right hemisphere
71.6
2692
Male, age 74, both hemispheres
71.4
2532
Female, age 72, left hemisphere
70.7
2622
Female, age 67, right hemisphere
69.3
2693
Female, age 94, both hemispheres
61.1
Perirhinal gyrus nTPM: 77.6
1794
Male, age 80, right hemisphere
89.0
1847
Female, age 91, left hemisphere
83.7
1841
Female, age 85, right hemisphere
78.3
2521
Female, age 94, right hemisphere
72.3
2848
Male, age 76, right hemisphere
64.7
Subiculum nTPM: 79.1
1901
Male, age 80, both hemispheres
83.6
2042
Male, age 76, both hemispheres
82.7
1977
Female, age 85, both hemispheres
80.7
2729
Female, age 91, right hemisphere
78.4
2619
Male, age 74, both hemispheres
76.9
2438
Female, age 94, left hemisphere
72.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
128.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 128.6
Samples: 197
Max nTPM: 280.2
Min nTPM: 64.5
Std nTPM: 32.3
Median nTPM: 124.0
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
280.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
238.3
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
236.8
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
221.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
218.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
207.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
206.0
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
203.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
196.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
184.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
182.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
182.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
180.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
176.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
173.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
171.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
171.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
171.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
168.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
168.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
166.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
165.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
164.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
162.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
160.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
159.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
158.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
157.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
154.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
153.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
153.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
153.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
153.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
152.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
152.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
152.3
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
152.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
152.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
151.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
150.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
150.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
150.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
148.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
148.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
147.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
147.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
147.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
145.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
145.5
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
145.4
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
144.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
143.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
142.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
142.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
142.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
142.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
140.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
139.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
138.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
138.7
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
138.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
138.3
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
138.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
137.8
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
137.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
137.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
137.1
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
134.4
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
134.3
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
134.0
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
134.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
133.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
133.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
133.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
132.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
132.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
132.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
131.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
131.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
131.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
131.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
131.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
131.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
130.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
129.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
129.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
129.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
128.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
128.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
127.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
126.6
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
126.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
125.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
125.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
125.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
125.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
125.3
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
124.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
124.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
123.7
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
123.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
123.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
122.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
121.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
121.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
121.7
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
121.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
121.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
120.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
120.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
119.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
119.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
119.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
119.3
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
118.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
118.3
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
118.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
117.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
116.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
116.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
115.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
115.9
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
115.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
115.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
115.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
115.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
114.8
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
114.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
112.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
112.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
111.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
111.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
111.2
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
110.9
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
110.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
110.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
110.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
110.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
110.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
109.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
109.7
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
109.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
109.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
109.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
108.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
108.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
108.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
108.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
107.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
106.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
106.4
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
104.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
104.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
104.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
103.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
102.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
101.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
101.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
100.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
100.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
100.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
99.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
99.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
99.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
98.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
98.1
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
97.8
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
97.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
97.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
97.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
96.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
96.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
96.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
96.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
96.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
96.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
95.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
95.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
95.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
94.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
94.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
93.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
91.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
90.7
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
89.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
87.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
86.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
85.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
84.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
83.6
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
83.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
80.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
74.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
73.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
73.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
68.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
64.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.