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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
High
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
276.6
nTPM
HPA Brain:
143.2
nTPM
GTEx:
276.6
nTPM
FANTOM5:
21.8
Scaled Tags Per Million
Pig:
132.9
nTPM
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA042570
Antibody CAB011481
Antibody CAB037178
Glial cells
High
High
High
Neuronal cells
High
Medium
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
143.2
Sample id
Sample description
nTPM
Hippocampus nTPM: 139.5
1898
Male, age 80, left hemisphere
159.3
1911
Female, age 85, right hemisphere
155.9
2529
Female, age 94, left hemisphere
154.4
1855
Male, age 76, left hemisphere
134.7
2621
Female, age 67, right hemisphere
123.3
2148
Female, age 91, left hemisphere
109.3
Dentate gyrus nTPM: 128.6
2530
Female, age 94, left hemisphere
149.8
2528
Male, age 74, both hemispheres
143.4
2010
Male, age 76, both hemispheres
133.5
1927
Female, age 91, both hemispheres
126.8
2246
Female, age 85, both hemispheres
123.5
2531
Female, age 67, both hemispheres
94.6
Entorhinal gyrus nTPM: 120.8
2117
Female, age 91, right hemisphere
167.9
1938
Female, age 85, left hemisphere
141.7
1787
Male, age 76, left hemisphere
119.5
2764
Male, age 80, right hemisphere
111.7
2686
Male, age 75, right hemisphere
93.4
2613
Female, age 94, left hemisphere
90.4
Hippocampus, CA1 nTPM: 132.6
1873
Female, age 85, both hemispheres
147.5
2527
Male, age 74, both hemispheres
143.9
2749
Male, age 80, left hemisphere
125.9
2082
Female, age 91, right hemisphere
125.7
2045
Male, age 76, both hemispheres
120.0
Hippocampus, CA2 nTPM: 143.2
2249
Male, age 74, both hemispheres
186.5
1940
Female, age 85, left hemisphere
149.8
1963
Male, age 80, left hemisphere
136.4
2113
Female, age 91, right hemisphere
133.7
1892
Male, age 76, both hemispheres
128.7
2437
Female, age 94, left hemisphere
123.9
Hippocampus, CA3 nTPM: 126.0
1891
Female, age 85, both hemispheres
168.0
2436
Male, age 74, both hemispheres
158.6
1867
Male, age 76, both hemispheres
131.2
2137
Male, age 80, left hemisphere
110.5
2620
Female, age 94, left hemisphere
100.9
2861
Female, age 67, both hemispheres
86.9
Parahippocampal cortex nTPM: 119.3
2250
Female, age 67, right hemisphere
157.5
1990
Female, age 91, right hemisphere
138.9
1933
Female, age 85, both hemispheres
138.2
1850
Male, age 80, both hemispheres
123.7
2018
Male, age 76, both hemispheres
115.7
2245
Female, age 91, both hemispheres
115.1
2693
Female, age 94, both hemispheres
111.3
2532
Female, age 72, left hemisphere
109.3
2692
Male, age 74, both hemispheres
102.0
2622
Female, age 67, right hemisphere
81.0
Perirhinal gyrus nTPM: 115.1
2521
Female, age 94, right hemisphere
126.0
1841
Female, age 85, right hemisphere
125.8
1847
Female, age 91, left hemisphere
112.0
1794
Male, age 80, right hemisphere
108.5
2848
Male, age 76, right hemisphere
103.4
Subiculum nTPM: 134.8
1977
Female, age 85, both hemispheres
154.5
2042
Male, age 76, both hemispheres
149.5
2729
Female, age 91, right hemisphere
144.9
1901
Male, age 80, both hemispheres
140.8
2619
Male, age 74, both hemispheres
126.1
2438
Female, age 94, left hemisphere
93.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
276.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 276.6
Samples: 197
Max nTPM: 638.8
Min nTPM: 128.3
Std nTPM: 72.3
Median nTPM: 265.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
638.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
514.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
499.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
438.0
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
432.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
429.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
421.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
418.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
412.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
406.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
401.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
395.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
393.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
392.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
392.3
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
389.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
388.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
386.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
386.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
377.2
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
376.9
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
373.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
369.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
369.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
364.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
355.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
352.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
350.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
336.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
334.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
333.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
333.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
333.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
332.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
331.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
331.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
330.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
330.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
329.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
327.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
326.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
324.5
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
322.3
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
320.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
318.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
315.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
313.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
312.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
311.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
310.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
310.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
310.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
309.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
308.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
308.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
307.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
306.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
305.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
303.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
301.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
299.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
298.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
296.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
295.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
294.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
294.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
293.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
293.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
293.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
292.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
292.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
291.6
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
290.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
290.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
290.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
289.9
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
288.1
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
288.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
287.4
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
286.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
285.7
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
285.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
283.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
282.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
281.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
280.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
279.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
278.7
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
274.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
274.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
273.4
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
271.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
268.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
268.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
267.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
267.4
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
266.9
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
265.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
265.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
264.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
264.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
263.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
262.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
262.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
261.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
259.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
259.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
259.5
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
259.2
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
258.6
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
258.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
258.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
256.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
255.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
255.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
253.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
252.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
251.2
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
250.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
249.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
248.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
248.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
248.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
246.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
246.5
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
246.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
244.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
243.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
243.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
243.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
241.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
241.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
241.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
241.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
240.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
240.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
239.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
239.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
237.6
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
237.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
237.1
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
237.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
235.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
234.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
234.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
232.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
229.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
228.8
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
228.1
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
228.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
227.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
226.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
224.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
224.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
222.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
221.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
218.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
214.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
213.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
213.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
212.2
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
209.9
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
208.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
207.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
207.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
206.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
205.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
203.3
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
203.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
201.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
200.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
199.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
198.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
198.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
195.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
194.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
193.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
191.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
189.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
188.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
188.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
187.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
186.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
185.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
185.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
182.5
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
181.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
181.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
179.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
176.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
173.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
170.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
163.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
163.0
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
161.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
152.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
128.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.