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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
97.9
nTPM
HPA Brain:
41.9
nTPM
GTEx:
97.9
nTPM
FANTOM5:
110.0
Scaled Tags Per Million
Mouse:
27.6
nTPM
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA048362
Glial cells
Low
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
41.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 33.1
1898
Male, age 80, left hemisphere
43.2
2529
Female, age 94, left hemisphere
34.4
2148
Female, age 91, left hemisphere
32.3
2621
Female, age 67, right hemisphere
31.5
1911
Female, age 85, right hemisphere
30.3
1855
Male, age 76, left hemisphere
26.5
Dentate gyrus nTPM: 35.2
1927
Female, age 91, both hemispheres
43.9
2530
Female, age 94, left hemisphere
41.0
2010
Male, age 76, both hemispheres
34.3
2531
Female, age 67, both hemispheres
32.0
2246
Female, age 85, both hemispheres
30.3
2528
Male, age 74, both hemispheres
29.5
Entorhinal gyrus nTPM: 37.8
2764
Male, age 80, right hemisphere
42.5
1787
Male, age 76, left hemisphere
40.7
1938
Female, age 85, left hemisphere
39.6
2613
Female, age 94, left hemisphere
37.8
2117
Female, age 91, right hemisphere
34.1
2686
Male, age 75, right hemisphere
32.1
Hippocampus, CA1 nTPM: 38.0
2749
Male, age 80, left hemisphere
58.1
2045
Male, age 76, both hemispheres
34.1
2527
Male, age 74, both hemispheres
34.0
1873
Female, age 85, both hemispheres
33.3
2082
Female, age 91, right hemisphere
30.4
Hippocampus, CA2 nTPM: 38.8
1892
Male, age 76, both hemispheres
52.1
2437
Female, age 94, left hemisphere
38.9
1940
Female, age 85, left hemisphere
38.3
1963
Male, age 80, left hemisphere
38.3
2249
Male, age 74, both hemispheres
33.4
2113
Female, age 91, right hemisphere
31.8
Hippocampus, CA3 nTPM: 36.6
2137
Male, age 80, left hemisphere
43.1
1867
Male, age 76, both hemispheres
42.7
2620
Female, age 94, left hemisphere
33.7
2861
Female, age 67, both hemispheres
33.6
1891
Female, age 85, both hemispheres
33.4
2436
Male, age 74, both hemispheres
33.4
Parahippocampal cortex nTPM: 36.1
1933
Female, age 85, both hemispheres
41.2
1850
Male, age 80, both hemispheres
40.7
1990
Female, age 91, right hemisphere
40.6
2245
Female, age 91, both hemispheres
39.9
2018
Male, age 76, both hemispheres
38.1
2532
Female, age 72, left hemisphere
37.4
2250
Female, age 67, right hemisphere
36.6
2693
Female, age 94, both hemispheres
32.6
2622
Female, age 67, right hemisphere
27.7
2692
Male, age 74, both hemispheres
26.6
Perirhinal gyrus nTPM: 41.9
1847
Female, age 91, left hemisphere
51.1
1841
Female, age 85, right hemisphere
44.1
1794
Male, age 80, right hemisphere
43.4
2521
Female, age 94, right hemisphere
36.0
2848
Male, age 76, right hemisphere
34.9
Subiculum nTPM: 33.1
1977
Female, age 85, both hemispheres
39.7
1901
Male, age 80, both hemispheres
36.6
2619
Male, age 74, both hemispheres
31.8
2042
Male, age 76, both hemispheres
31.5
2729
Female, age 91, right hemisphere
29.9
2438
Female, age 94, left hemisphere
29.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
97.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 97.9
Samples: 197
Max nTPM: 274.6
Min nTPM: 28.9
Std nTPM: 35.9
Median nTPM: 90.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
274.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
235.3
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
216.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
212.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
209.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
192.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
182.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
178.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
169.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
165.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
165.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
160.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
158.9
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
157.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
154.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
153.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
149.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
147.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
144.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
141.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
140.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
138.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
138.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
134.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
134.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
133.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
133.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
131.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
130.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
127.9
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
125.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
124.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
124.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
123.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
122.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
121.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
120.7
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
120.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
119.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
119.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
118.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
116.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
116.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
115.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
115.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
115.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
114.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
114.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
114.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
113.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
113.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
112.4
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
112.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
110.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
109.2
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
109.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
108.8
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
108.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
107.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
106.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
105.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
104.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
104.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
103.8
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
103.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
101.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
101.9
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
101.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
101.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
100.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
100.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
100.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
99.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
99.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
99.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
98.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
98.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
97.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
97.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
97.3
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
97.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
96.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
94.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
94.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
94.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
94.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
94.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
94.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
93.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
93.5
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
92.9
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
92.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
92.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
92.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
91.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
91.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
91.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
90.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
90.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
90.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
89.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
88.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
88.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
88.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
87.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
87.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
87.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
86.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
86.9
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
86.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
85.8
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
84.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
84.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
84.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
84.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
84.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
84.4
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
84.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
83.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
83.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
83.2
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
83.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
82.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
82.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
82.7
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
82.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
82.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
82.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
81.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
80.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
80.7
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
80.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
79.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
79.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
79.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
78.7
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
78.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
78.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
78.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
77.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
77.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
76.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
75.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
75.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
74.8
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
74.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
74.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
74.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
73.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
73.3
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
72.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
72.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
72.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
72.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
71.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
71.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
71.2
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
71.1
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
70.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
69.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
69.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
69.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
69.2
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
68.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
68.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
67.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
66.6
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
66.6
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
66.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
66.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
65.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
65.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
65.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
65.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
64.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
63.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
63.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
63.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
63.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
63.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
62.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
62.6
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
62.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
61.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
59.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
58.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
57.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
57.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
56.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
55.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
52.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
49.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
49.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
49.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
48.4
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
32.6
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
28.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.