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  • PSMB1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:123.5 nTPM
HPA Brain:71.5 nTPM
GTEx:123.5 nTPM
FANTOM5:139.5 Scaled Tags Per Million
Pig:78.9 nTPM
Mouse:137.1 nTPM
Allen mouse:7.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.5
Sample id Sample description nTPM
Amygdala
nTPM: 71.5
2514 Male, age 75, right hemisphere 78.9
2695 Female, age 67, right hemisphere 77.0
2814 Male, age 76, right hemisphere 71.9
1987 Female, age 91, left hemisphere 67.7
2517 Female, age 94, left hemisphere 62.2
Basal amygdala
nTPM: 53.5
2110 Male, age 80, left hemisphere 63.6
2609 Male, age 75, right hemisphere 57.4
1955 Male, age 76, both hemispheres 56.8
2685 Female, age 94, left hemisphere 51.8
2243 Female, age 91, right hemisphere 49.5
2827 Female, age 67, right hemisphere 42.1
Central amygdala
nTPM: 58.7
1905 Male, age 76, both hemispheres 65.3
2515 Male, age 75, right hemisphere 64.9
2826 Female, age 94, left hemisphere 59.7
2239 Male, age 80, left hemisphere 55.2
2701 Female, age 91, right hemisphere 48.1
Corticomedial amygdala
nTPM: 57.6
2428 Male, age 75, right hemisphere 69.8
2429 Female, age 94, left hemisphere 66.4
2829 Male, age 80, left hemisphere 62.7
2242 Female, age 91, right hemisphere 54.6
2240 Male, age 76, both hemispheres 52.7
2535 Female, age 67, right hemisphere 39.3
Lateral amygdala
nTPM: 57.4
2516 Male, age 75, right hemisphere 69.5
1883 Male, age 76, both hemispheres 64.8
2534 Female, age 94, left hemisphere 63.7
2256 Male, age 80, left hemisphere 51.2
2255 Female, age 91, right hemisphere 48.5
2830 Female, age 67, right hemisphere 46.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 123.5
Samples: 181

Max nTPM: 267.3
Min nTPM: 80.4
Std nTPM: 27.2
Median nTPM: 120.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 267.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 244.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 222.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 212.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 188.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 180.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 176.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 173.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 165.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 164.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 161.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 161.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 160.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 159.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 159.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 158.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 158.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 156.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 150.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 148.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 147.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 147.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 147.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 146.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 145.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 145.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 145.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 145.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 143.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 143.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 143.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 143.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 142.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 142.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 142.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 141.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 140.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 140.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 140.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 140.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 139.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 138.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 138.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 138.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 138.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 136.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 135.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 135.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 135.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 134.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 132.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 132.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 131.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 130.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 130.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 130.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 130.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 130.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 130.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 129.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 128.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 128.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 128.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 128.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 127.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 127.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 127.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 126.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 125.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 125.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 124.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 124.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 124.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 124.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 123.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 123.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 123.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 123.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 123.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 122.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 122.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 122.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 122.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 122.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 121.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 120.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 120.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 120.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 120.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 120.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 120.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 119.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 119.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 119.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 118.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 118.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 118.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 118.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 118.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 118.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 117.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 117.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 117.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 116.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 116.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 116.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 116.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 115.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 115.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 115.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 114.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 114.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 113.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 113.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 112.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 112.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 112.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 111.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 110.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 110.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 110.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 109.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 109.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 109.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 109.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 109.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 108.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 108.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 108.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 106.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 106.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 105.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 105.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 105.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 105.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 105.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 105.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 104.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 103.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 103.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 103.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 103.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 102.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 102.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 102.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 102.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 102.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 100.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 100.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 100.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 100.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 99.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 99.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 98.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 97.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 97.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 96.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 96.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 95.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 95.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 95.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 95.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 95.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 94.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 94.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 94.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 94.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 94.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 91.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 91.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 91.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 90.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 90.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 90.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 88.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 88.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 86.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 84.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 82.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 81.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 80.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

139.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 139.5
FF:10151-102I7 76 years, female 139.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.9
Pig sample Sample description nTPM
Amygdala
nTPM: 78.9
Samples: 4

Max nTPM: 106.3
Min nTPM: 66.3
Sample A Female 106.3
Sample B Female 75.2
Sample C Male 66.3
Sample D Male 67.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 137.1
Samples: 4

Max nTPM: 142.8
Min nTPM: 128.7
Sample A Male 142.8
Sample B Male 141.1
Sample C Female 128.7
Sample D Female 135.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.6
74059243 Antisense, RP_051121_03_C07, Mouse strain C57BL/6J (56 days, male) 7.6

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