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  • PSMB1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:157.5 nTPM
HPA Brain:92.1 nTPM
GTEx:157.5 nTPM
FANTOM5:200.8 Scaled Tags Per Million
Pig:143.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 79.1
1981 Female, age 72, midline 110.7
2048 Male, age 55, midline 85.7
2816 Male, age 47, midline 68.8
2194 Female, age 79, both hemispheres 66.0
2565 Male, age 75, midline 64.5
Cervical spinal cord, dorsal horn
nTPM: 92.1
2173 Female, age 72, unknown 118.4
2296 Male, age 66, both hemispheres 114.6
2069 Male, age 47, both hemispheres 98.3
1877 Male, age 55, unknown 87.8
2297 Male, age 75, both hemispheres 71.7
2721 Male, age 90, both hemispheres 61.9
Cervical spinal cord, ventral horn
nTPM: 80.7
2098 Female, age 72, unknown 113.3
2480 Male, age 75, both hemispheres 87.7
2809 Male, age 90, both hemispheres 84.4
2068 Male, age 55, unknown 82.3
2295 Male, age 66, both hemispheres 65.4
2820 Female, age 79, both hemispheres 51.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 157.5
Samples: 204

Max nTPM: 291.3
Min nTPM: 94.6
Std nTPM: 34.5
Median nTPM: 153.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 291.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 278.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 255.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 252.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 241.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 238.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 236.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 233.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 228.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 222.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 219.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 216.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 214.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 210.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 210.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 209.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 209.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 208.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 207.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 206.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 205.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 201.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 200.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 200.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 198.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 197.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 197.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 195.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 190.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 190.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 190.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 188.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 187.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 187.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 187.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 185.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 185.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 184.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 184.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 183.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 182.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 181.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 181.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 180.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 180.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 179.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 179.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 178.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 176.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 175.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 175.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 175.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 174.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 174.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 173.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 173.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 172.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 172.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 171.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 171.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 170.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 170.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 170.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 169.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 168.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 168.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 168.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 167.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 167.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 167.6
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 166.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 166.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 166.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 165.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 165.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 164.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 164.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 163.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 163.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 162.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 162.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 162.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 162.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 161.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 160.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 160.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 160.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 160.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 160.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 158.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 158.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 158.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 158.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 157.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 156.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 156.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 155.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 154.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 154.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 154.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 154.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 153.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 153.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 152.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 152.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 152.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 151.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 151.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 149.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 149.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 149.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 149.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 149.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 148.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 147.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 147.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 147.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 147.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 147.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 147.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 147.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 146.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 145.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 145.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 144.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 143.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 143.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 143.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 142.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 141.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 141.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 140.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 140.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 140.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 139.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 139.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 138.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 138.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 137.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 137.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 137.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 137.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 136.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 136.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 135.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 134.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 134.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 133.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 133.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 133.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 133.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 132.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 132.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 131.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 131.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 131.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 130.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 130.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 130.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 129.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 129.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 128.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 128.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 128.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 127.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 127.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 126.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 126.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 126.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 126.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 126.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 126.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 125.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 125.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 124.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 124.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 123.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 123.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 122.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 122.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 121.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 121.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 120.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 118.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 117.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 117.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 116.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 114.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 114.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 113.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 113.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 113.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 110.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 110.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 108.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 108.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 105.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 102.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 100.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 100.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 99.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 98.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 98.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 94.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

200.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 200.8
FF:10181-103D1 60 years, female 251.1
FF:10159-103A6 76 years, female 150.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 125.7
Samples: 4

Max nTPM: 138.3
Min nTPM: 116.5
Sample A Female 128.1
Sample B Female 119.8
Sample C Male 138.3
Sample D Male 116.5
Ventral spinal cord
nTPM: 143.7
Samples: 4

Max nTPM: 154.0
Min nTPM: 132.9
Sample A Female 135.7
Sample B Female 154.0
Sample C Male 152.1
Sample D Male 132.9

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