MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.3 nTPM
HPA Brain:275.9 nTPM
GTEx:57.3 nTPM
FANTOM5:172.2 Scaled Tags Per Million
Pig:184.1 nTPM
Mouse:17.1 nTPM
Allen mouse:1.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 275.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 269.4
2586 Male, age 75, left hemisphere 398.7
2828 Female, age 72, unknown 329.6
2666 Male, age 74, left hemisphere 284.6
2219 Male, age 76, both hemispheres 269.8
1830 Male, age 51, unknown 266.6
1870 Female, age 42, unknown 254.5
1833 Male, age 53, unknown 245.3
2019 Male, age 18, unknown 224.1
1827 Male, age 72, unknown 212.8
2411 Female, age 72, unknown 208.0
Dorsal raphe nucleus
nTPM: 226.7
2016 Female, age 72, unknown 303.4
1828 Male, age 53, unknown 229.4
2750 Male, age 76, both hemispheres 211.8
2047 Male, age 72, unknown 199.1
2298 Female, age 72, unknown 189.5
Inferior colliculus
nTPM: 199.6
2849 Male, age 72, unknown 254.9
1848 Female, age 42, unknown 218.4
1890 Male, age 53, unknown 188.2
2097 Female, age 72, unknown 136.7
Median raphe nucleus
nTPM: 143.7
2220 Male, age 76, midline 143.7
Periaquaductal grey, anterior
nTPM: 237.5
2502 Female, age 75, unknown 276.2
1795 Male, age 51, unknown 231.3
1947 Male, age 18, unknown 205.0
Periaquaductal grey, dorsal
nTPM: 214.1
2850 Male, age 76, both hemispheres 223.1
1840 Male, age 53, unknown 213.6
2464 Female, age 72, unknown 213.5
1831 Male, age 72, unknown 206.1
Periaquaductal grey, lateral
nTPM: 234.0
2053 Male, age 18, unknown 255.3
2272 Male, age 74, both hemispheres 250.2
2140 Male, age 76, both hemispheres 196.7
Pretectal area
nTPM: 214.2
2407 Male, age 75, both hemispheres 283.2
2825 Male, age 18, unknown 259.7
2273 Male, age 74, both hemispheres 256.4
2667 Female, age 75, unknown 221.9
2316 Male, age 76, right hemisphere 220.7
1815 Male, age 53, unknown 219.1
2224 Female, age 72, unknown 203.9
1817 Female, age 42, unknown 187.3
1944 Female, age 72, unknown 174.0
2007 Male, age 72, unknown 167.5
1816 Male, age 51, unknown 162.6
Red nucleus
nTPM: 275.9
2769 Male, age 72, unknown 309.6
2227 Male, age 72, unknown 305.2
1865 Male, age 51, unknown 304.4
2584 Male, age 75, left hemisphere 294.1
2503 Female, age 72, unknown 283.0
2588 Male, age 74, left hemisphere 281.9
1904 Male, age 53, unknown 274.9
2823 Male, age 76, right hemisphere 271.9
2785 Male, age 18, unknown 263.7
1821 Female, age 72, unknown 252.2
1954 Female, age 42, unknown 249.9
2725 Female, age 75, unknown 220.2
Substantia nigra
nTPM: 219.3
2699 Male, age 18, unknown 310.0
2583 Male, age 75, right hemisphere 292.3
1851 Male, age 51, unknown 229.0
2590 Female, age 75, unknown 224.0
1941 Male, age 53, unknown 222.3
2665 Male, age 74, both hemispheres 215.6
2409 Female, age 72, unknown 188.2
1916 Female, age 42, unknown 176.4
1889 Female, age 72, unknown 174.1
2241 Male, age 72, unknown 160.7
Superior colliculus
nTPM: 257.6
1995 Male, age 72, unknown 368.7
2664 Male, age 75, both hemispheres 354.9
1913 Female, age 42, unknown 331.4
1839 Male, age 51, unknown 262.5
2587 Male, age 74, left hemisphere 251.8
2668 Female, age 75, unknown 241.2
1796 Male, age 53, unknown 228.7
1895 Male, age 76, right hemisphere 181.4
2261 Male, age 18, unknown 179.8
2087 Female, age 72, unknown 176.1
Ventral tegmental area
nTPM: 207.6
2223 Female, age 72, unknown 250.2
2021 Male, age 53, unknown 224.9
1942 Male, age 51, unknown 215.0
1915 Female, age 42, unknown 207.1
2410 Female, age 72, unknown 205.5
2218 Male, age 76, both hemispheres 143.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 57.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.3
Samples: 183

Max nTPM: 125.3
Min nTPM: 18.6
Std nTPM: 18.4
Median nTPM: 55.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 125.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 109.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 104.4
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 101.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 99.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 96.7
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 95.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 90.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 88.8
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 88.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 88.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 172.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 172.2
FF:10158-103A5 76 years, female 172.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 184.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 181.5
Samples: 4

Max nTPM: 249.6
Min nTPM: 146.3
Sample A Female 159.5
Sample B Female 146.3
Sample C Male 170.5
Sample D Male 249.6
Midbrain
nTPM: 184.1
Samples: 4

Max nTPM: 344.8
Min nTPM: 111.5
Sample A Female 344.8
Sample B Female 150.1
Sample C Male 130.1
Sample D Male 111.5
Periaqueductal gray
nTPM: 148.1
Samples: 3

Max nTPM: 150.0
Min nTPM: 146.6
Sample B Female 146.6
Sample C Male 150.0
Sample D Male 147.7
Superior colliculi
nTPM: 143.1
Samples: 4

Max nTPM: 169.9
Min nTPM: 102.2
Sample A Female 153.0
Sample B Female 102.2
Sample C Male 147.4
Sample D Male 169.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.1
Samples: 4

Max nTPM: 18.6
Min nTPM: 13.9
Sample A Male 18.6
Sample B Male 18.4
Sample C Female 13.9
Sample D Female 17.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
77620379 Antisense, RP_070205_01_D12, Mouse strain C57BL/6J (56 days, male) 1.8
2424 Antisense, RP_Baylor_102930, Mouse strain C57BL/6J (56 days, male) 1.5
77413698 Antisense, RP_070205_01_D12, Mouse strain C57BL/6J (56 days, male) 1.1
2423 Antisense, RP_Baylor_102930, Mouse strain C57BL/6J (56 days, male) 0.0

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