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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:71.9 nTPM
HPA Brain:283.2 nTPM
GTEx:71.9 nTPM
FANTOM5:119.5 Scaled Tags Per Million
Pig:244.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

283.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 283.2
2565 Male, age 75, midline 323.5
2048 Male, age 55, midline 307.8
2816 Male, age 47, midline 294.6
1981 Female, age 72, midline 246.4
2194 Female, age 79, both hemispheres 243.6
Cervical spinal cord, dorsal horn
nTPM: 221.3
2296 Male, age 66, both hemispheres 278.1
2173 Female, age 72, unknown 237.7
1877 Male, age 55, unknown 218.2
2721 Male, age 90, both hemispheres 217.9
2069 Male, age 47, both hemispheres 198.2
2297 Male, age 75, both hemispheres 177.7
Cervical spinal cord, ventral horn
nTPM: 259.2
2809 Male, age 90, both hemispheres 291.3
2480 Male, age 75, both hemispheres 285.0
2295 Male, age 66, both hemispheres 269.5
2098 Female, age 72, unknown 251.8
2820 Female, age 79, both hemispheres 231.7
2068 Male, age 55, unknown 226.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 71.9
Samples: 204

Max nTPM: 126.5
Min nTPM: 23.0
Std nTPM: 19.4
Median nTPM: 73.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 126.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 112.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 112.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 112.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 110.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 110.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 108.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 106.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 104.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 103.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 101.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 101.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 99.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 99.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 98.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 98.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 98.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 98.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 97.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 97.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 96.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 95.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 94.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 94.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 94.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 94.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 94.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 92.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 92.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 92.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 90.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 90.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 90.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 89.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 89.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 89.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 89.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 88.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 88.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 88.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 87.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 87.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 87.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 87.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 87.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 86.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 86.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 86.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 86.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 85.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 85.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 85.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 85.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 84.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 83.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 83.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 82.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 82.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 82.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 81.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 81.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 81.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 81.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 81.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 80.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 80.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 80.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 80.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 80.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 80.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 79.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 79.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 79.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 79.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 79.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 79.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 79.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 78.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 78.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 77.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 77.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 77.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 76.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 76.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 76.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 75.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 75.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 75.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 75.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 74.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 74.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 74.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 74.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 74.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 73.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 73.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 73.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 73.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 73.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 73.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 73.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 73.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 73.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 72.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 72.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 72.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 72.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 71.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 71.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 71.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 71.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 71.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 71.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 71.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 70.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 70.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 69.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 69.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 69.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 69.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 69.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 69.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 68.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 68.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 68.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 67.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 67.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 67.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 67.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 67.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 67.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 67.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 67.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 66.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 66.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 65.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 65.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 65.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 64.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 64.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 63.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 63.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 63.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 62.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 62.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 62.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 62.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 62.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 62.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 60.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 60.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 60.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 59.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 59.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 59.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 58.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 58.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 56.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 56.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 56.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 56.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 56.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 56.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 55.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 55.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 55.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 54.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 54.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 53.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 52.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 52.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 52.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 51.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 51.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 50.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 49.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 49.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 48.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 47.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 47.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 46.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 46.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 45.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 45.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 45.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 45.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 44.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 42.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 42.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 40.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 39.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 38.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 37.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 36.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 35.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 34.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 33.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 32.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 31.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 31.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 26.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 25.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 25.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 23.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

119.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 119.5
FF:10181-103D1 60 years, female 126.3
FF:10159-103A6 76 years, female 112.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

244.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 193.9
Samples: 4

Max nTPM: 216.2
Min nTPM: 180.7
Sample A Female 188.7
Sample B Female 180.7
Sample C Male 189.9
Sample D Male 216.2
Ventral spinal cord
nTPM: 244.9
Samples: 4

Max nTPM: 278.7
Min nTPM: 207.4
Sample A Female 278.7
Sample B Female 207.4
Sample C Male 235.8
Sample D Male 257.5

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