On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
270.7
nTPM
HPA Brain:
238.4
nTPM
GTEx:
270.7
nTPM
FANTOM5:
112.2
Scaled Tags Per Million
Macaque:
413.7
nTPM
Mouse:
649.5
nTPM
Rat:
255.6
nTPM
Pig:
277.2
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
238.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 166.9
2019
Male, age 18, unknown
284.8
2411
Female, age 72, unknown
229.2
1827
Male, age 72, unknown
189.3
2219
Male, age 76, both hemispheres
178.9
1870
Female, age 42, unknown
145.4
1833
Male, age 53, unknown
144.1
2828
Female, age 72, unknown
138.9
1830
Male, age 51, unknown
133.3
2666
Male, age 74, left hemisphere
127.0
2586
Male, age 75, left hemisphere
98.3
Dorsal raphe nucleus nTPM: 189.3
2298
Female, age 72, unknown
249.4
1828
Male, age 53, unknown
214.7
2047
Male, age 72, unknown
184.5
2750
Male, age 76, both hemispheres
169.1
2016
Female, age 72, unknown
128.9
Inferior colliculus nTPM: 200.6
2097
Female, age 72, unknown
284.0
1890
Male, age 53, unknown
215.7
1848
Female, age 42, unknown
178.7
2849
Male, age 72, unknown
124.0
Median raphe nucleus nTPM: 184.0
2220
Male, age 76, midline
184.0
Periaquaductal grey, anterior nTPM: 157.7
2502
Female, age 75, unknown
168.9
1947
Male, age 18, unknown
158.0
1795
Male, age 51, unknown
146.1
Periaquaductal grey, dorsal nTPM: 141.8
1831
Male, age 72, unknown
156.6
2464
Female, age 72, unknown
151.5
1840
Male, age 53, unknown
146.9
2850
Male, age 76, both hemispheres
112.4
Periaquaductal grey, lateral nTPM: 144.0
2272
Male, age 74, both hemispheres
191.7
2053
Male, age 18, unknown
127.6
2140
Male, age 76, both hemispheres
112.9
Pretectal area nTPM: 228.1
2007
Male, age 72, unknown
341.1
1817
Female, age 42, unknown
322.2
1944
Female, age 72, unknown
315.3
1816
Male, age 51, unknown
305.1
1815
Male, age 53, unknown
237.7
2667
Female, age 75, unknown
214.8
2273
Male, age 74, both hemispheres
211.0
2224
Female, age 72, unknown
180.8
2316
Male, age 76, right hemisphere
137.0
2407
Male, age 75, both hemispheres
122.3
2825
Male, age 18, unknown
121.9
Red nucleus nTPM: 176.6
1821
Female, age 72, unknown
270.1
2785
Male, age 18, unknown
242.9
2725
Female, age 75, unknown
199.0
1954
Female, age 42, unknown
182.4
2823
Male, age 76, right hemisphere
173.2
1865
Male, age 51, unknown
169.9
1904
Male, age 53, unknown
156.2
2769
Male, age 72, unknown
154.4
2227
Male, age 72, unknown
152.4
2503
Female, age 72, unknown
150.6
2588
Male, age 74, left hemisphere
135.5
2584
Male, age 75, left hemisphere
132.3
Substantia nigra nTPM: 238.4
1916
Female, age 42, unknown
357.0
1889
Female, age 72, unknown
302.5
2241
Male, age 72, unknown
275.6
1851
Male, age 51, unknown
271.5
1941
Male, age 53, unknown
268.8
2409
Female, age 72, unknown
250.9
2665
Male, age 74, both hemispheres
189.2
2590
Female, age 75, unknown
168.8
2699
Male, age 18, unknown
162.2
2583
Male, age 75, right hemisphere
137.0
Superior colliculus nTPM: 168.0
2087
Female, age 72, unknown
265.5
1895
Male, age 76, right hemisphere
214.0
2668
Female, age 75, unknown
177.0
2261
Male, age 18, unknown
174.9
1796
Male, age 53, unknown
170.7
2587
Male, age 74, left hemisphere
166.3
1839
Male, age 51, unknown
145.4
1913
Female, age 42, unknown
133.1
1995
Male, age 72, unknown
125.3
2664
Male, age 75, both hemispheres
107.4
Ventral tegmental area nTPM: 202.4
2410
Female, age 72, unknown
289.5
1915
Female, age 42, unknown
245.9
2218
Male, age 76, both hemispheres
242.6
1942
Male, age 51, unknown
166.8
2223
Female, age 72, unknown
143.6
2021
Male, age 53, unknown
126.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
270.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 270.7
Samples: 183
Max nTPM: 1156.1
Min nTPM: 66.5
Std nTPM: 197.9
Median nTPM: 193.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1156.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
1016.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
941.3
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
925.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
877.1
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
849.6
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
793.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
721.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
717.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
627.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
604.0
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
592.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
582.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
554.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
551.7
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
535.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
531.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
521.2
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
519.0
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
518.6
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
515.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
514.7
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
512.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
507.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
493.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
484.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
475.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
468.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
466.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
464.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
460.8
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
460.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
455.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
450.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
447.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
445.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
422.2
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
419.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
405.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
402.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
397.1
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
391.0
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
372.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
360.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
348.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
337.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
337.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
334.2
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
328.3
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
328.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
323.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
310.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
309.4
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
306.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
304.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
300.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
298.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
294.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
291.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
290.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
273.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
270.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
266.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
253.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
253.0
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
249.3
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
243.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
240.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
238.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
236.0
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
235.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
233.2
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
232.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
227.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
219.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
218.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
218.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
217.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
210.1
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
208.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
208.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
206.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
204.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
201.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
201.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
200.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
198.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
197.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
196.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
196.0
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
194.7
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
193.1
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
192.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
188.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
188.0
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
187.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
187.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
185.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
183.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
181.9
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
179.7
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
176.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
170.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
170.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
168.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
167.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
165.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
163.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
162.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
162.2
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
161.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
159.4
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
159.0
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
158.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
158.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
157.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
157.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
156.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
156.5
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
154.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
153.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
152.8
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
150.8
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
150.5
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
150.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
149.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
148.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
143.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
142.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
141.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
140.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
139.3
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
138.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
138.6
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
137.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
136.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
136.3
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
136.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
135.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
135.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
134.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
133.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
132.0
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
129.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
129.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
128.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
127.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
124.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
124.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
123.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
123.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
123.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
122.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
121.7
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
121.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
121.1
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
120.6
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
120.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
117.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
117.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
116.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
115.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
114.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
113.8
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
112.3
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
112.0
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
109.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
106.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
106.7
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
106.7
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
106.2
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
105.8
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
105.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
104.5
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
101.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
97.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
94.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
89.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
88.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
81.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
79.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
72.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
66.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
413.7
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 404.8
Samples: 1
Max nTPM: 404.8
Min nTPM: 404.8
Sample A
404.8
Midbrain nTPM: 300.4
Samples: 1
Max nTPM: 300.4
Min nTPM: 300.4
Sample A
300.4
Superior colliculi nTPM: 413.7
Samples: 1
Max nTPM: 413.7
Min nTPM: 413.7
Sample A
413.7
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
277.2
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 230.2
Samples: 3
Max nTPM: 307.0
Min nTPM: 153.2
Sample A
Female
307.0
Sample B
Female
153.2
Sample C
Male
230.5
Midbrain nTPM: 223.1
Samples: 3
Max nTPM: 255.9
Min nTPM: 173.0
Sample B
Female
173.0
Sample C
Male
255.9
Sample D
Male
240.4
Periaqueductal gray nTPM: 144.4
Samples: 3
Max nTPM: 163.6
Min nTPM: 120.6
Sample B
Female
149.1
Sample C
Male
163.6
Sample D
Male
120.6
Superior colliculi nTPM: 277.2
Samples: 4
Max nTPM: 359.3
Min nTPM: 206.4
Sample A
Female
314.2
Sample B
Female
206.4
Sample C
Male
359.3
Sample D
Male
228.8
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
649.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 649.5
Samples: 4
Max nTPM: 670.2
Min nTPM: 614.3
Sample A
670.2
Sample B
614.3
Sample C
660.5
Sample D
653.1
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
255.6
Rat sample
Sample description
nTPM
Midbrain nTPM: 255.6
Samples: 4
Max nTPM: 263.6
Min nTPM: 244.0
Sample A
262.0
Sample A
252.7
Sample A
263.6
Sample A
244.0
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The Human Protein Atlas project is funded
