On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
328.9
nTPM
HPA Brain:
738.0
nTPM
GTEx:
328.9
nTPM
FANTOM5:
536.3
Scaled Tags Per Million
Mouse:
722.7
nTPM
Rat:
736.2
nTPM
Pig:
761.4
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
738.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 497.2
2586
Male, age 75, left hemisphere
742.6
2828
Female, age 72, unknown
718.0
2666
Male, age 74, left hemisphere
531.3
1827
Male, age 72, unknown
492.0
1833
Male, age 53, unknown
485.3
2411
Female, age 72, unknown
432.2
1870
Female, age 42, unknown
425.8
1830
Male, age 51, unknown
421.3
2219
Male, age 76, both hemispheres
372.8
2019
Male, age 18, unknown
351.2
Dorsal raphe nucleus nTPM: 602.4
1828
Male, age 53, unknown
745.5
2047
Male, age 72, unknown
696.9
2016
Female, age 72, unknown
613.1
2298
Female, age 72, unknown
518.2
2750
Male, age 76, both hemispheres
438.3
Inferior colliculus nTPM: 738.0
1848
Female, age 42, unknown
782.1
1890
Male, age 53, unknown
728.6
2849
Male, age 72, unknown
723.8
2097
Female, age 72, unknown
717.4
Median raphe nucleus nTPM: 394.0
2220
Male, age 76, midline
394.0
Periaquaductal grey, anterior nTPM: 562.9
2502
Female, age 75, unknown
597.6
1947
Male, age 18, unknown
582.5
1795
Male, age 51, unknown
508.6
Periaquaductal grey, dorsal nTPM: 578.4
1840
Male, age 53, unknown
653.3
2464
Female, age 72, unknown
629.7
2850
Male, age 76, both hemispheres
584.8
1831
Male, age 72, unknown
445.6
Periaquaductal grey, lateral nTPM: 499.0
2053
Male, age 18, unknown
610.8
2140
Male, age 76, both hemispheres
598.1
2272
Male, age 74, both hemispheres
288.0
Pretectal area nTPM: 532.2
1817
Female, age 42, unknown
741.7
2667
Female, age 75, unknown
697.7
1816
Male, age 51, unknown
613.4
2825
Male, age 18, unknown
608.8
1944
Female, age 72, unknown
597.3
1815
Male, age 53, unknown
512.3
2316
Male, age 76, right hemisphere
455.9
2224
Female, age 72, unknown
455.5
2007
Male, age 72, unknown
421.1
2407
Male, age 75, both hemispheres
380.3
2273
Male, age 74, both hemispheres
370.2
Red nucleus nTPM: 642.4
1821
Female, age 72, unknown
778.3
1954
Female, age 42, unknown
766.2
2503
Female, age 72, unknown
759.1
2588
Male, age 74, left hemisphere
749.4
2823
Male, age 76, right hemisphere
724.9
2227
Male, age 72, unknown
706.6
2769
Male, age 72, unknown
705.1
2725
Female, age 75, unknown
601.0
1865
Male, age 51, unknown
596.5
1904
Male, age 53, unknown
596.2
2584
Male, age 75, left hemisphere
385.7
2785
Male, age 18, unknown
339.8
Substantia nigra nTPM: 566.2
2699
Male, age 18, unknown
814.5
1916
Female, age 42, unknown
652.7
1889
Female, age 72, unknown
604.6
2665
Male, age 74, both hemispheres
603.2
2241
Male, age 72, unknown
600.2
1851
Male, age 51, unknown
545.7
2409
Female, age 72, unknown
528.2
2583
Male, age 75, right hemisphere
449.5
1941
Male, age 53, unknown
435.5
2590
Female, age 75, unknown
428.1
Superior colliculus nTPM: 520.5
2664
Male, age 75, both hemispheres
695.9
2087
Female, age 72, unknown
616.9
1839
Male, age 51, unknown
572.3
2261
Male, age 18, unknown
560.1
1796
Male, age 53, unknown
498.6
1995
Male, age 72, unknown
497.1
2668
Female, age 75, unknown
482.6
1895
Male, age 76, right hemisphere
460.5
2587
Male, age 74, left hemisphere
445.9
1913
Female, age 42, unknown
375.5
Ventral tegmental area nTPM: 472.1
2410
Female, age 72, unknown
561.2
1915
Female, age 42, unknown
482.2
1942
Male, age 51, unknown
479.2
2021
Male, age 53, unknown
456.7
2218
Male, age 76, both hemispheres
455.1
2223
Female, age 72, unknown
398.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
328.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 328.9
Samples: 183
Max nTPM: 1395.3
Min nTPM: 46.5
Std nTPM: 198.1
Median nTPM: 286.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1395.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
1140.7
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
839.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
822.2
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
780.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
762.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
737.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
716.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
704.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
653.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
649.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
632.6
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
625.6
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
620.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
611.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
593.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
587.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
583.1
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
581.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
558.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
550.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
540.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
539.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
532.0
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
519.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
516.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
509.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
508.9
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
507.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
479.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
479.1
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
474.8
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
474.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
473.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
472.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
471.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
468.1
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
464.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
458.6
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
451.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
451.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
449.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
441.5
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
438.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
438.1
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
435.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
431.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
418.8
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
418.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
417.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
415.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
415.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
412.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
409.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
408.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
401.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
399.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
396.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
388.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
386.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
385.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
383.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
382.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
381.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
380.6
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
377.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
374.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
373.6
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
367.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
365.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
365.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
364.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
358.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
356.4
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
356.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
354.0
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
352.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
334.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
328.1
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
324.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
317.5
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
316.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
308.2
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
307.3
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
306.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
304.3
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
299.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
293.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
290.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
290.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
289.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
286.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
286.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
285.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
284.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
284.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
280.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
280.4
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
277.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
277.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
277.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
273.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
269.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
261.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
256.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
255.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
253.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
252.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
252.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
245.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
244.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
244.4
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
243.3
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
242.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
237.5
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
236.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
236.2
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
233.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
230.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
218.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
213.2
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
210.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
208.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
207.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
206.3
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
197.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
197.0
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
195.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
194.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
194.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
190.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
188.8
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
186.7
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
185.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
184.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
184.5
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
183.0
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
180.4
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
179.6
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
178.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
171.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
170.8
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
170.2
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
168.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
166.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
165.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
165.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
163.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
163.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
160.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
159.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
157.3
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
155.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
152.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
150.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
150.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
149.3
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
148.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
144.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
141.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
138.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
137.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
135.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
135.3
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
135.1
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
134.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
129.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
124.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
106.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
101.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
98.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
94.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
88.7
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
86.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
79.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
73.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
64.7
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
61.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
57.0
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
56.7
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
52.4
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
48.3
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
46.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
761.4
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 495.3
Samples: 3
Max nTPM: 598.0
Min nTPM: 418.7
Sample A
Female
418.7
Sample B
Female
598.0
Sample C
Male
469.3
Midbrain nTPM: 554.1
Samples: 3
Max nTPM: 607.9
Min nTPM: 485.4
Sample B
Female
485.4
Sample C
Male
607.9
Sample D
Male
568.9
Periaqueductal gray nTPM: 447.4
Samples: 3
Max nTPM: 505.3
Min nTPM: 378.1
Sample B
Female
505.3
Sample C
Male
458.7
Sample D
Male
378.1
Superior colliculi nTPM: 761.4
Samples: 4
Max nTPM: 1069.9
Min nTPM: 566.3
Sample A
Female
808.8
Sample B
Female
1069.9
Sample C
Male
600.7
Sample D
Male
566.3
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
722.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 722.7
Samples: 4
Max nTPM: 748.8
Min nTPM: 689.5
Sample A
689.5
Sample B
706.0
Sample C
748.8
Sample D
746.3
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
736.2
Rat sample
Sample description
nTPM
Midbrain nTPM: 736.2
Samples: 4
Max nTPM: 750.7
Min nTPM: 716.5
Sample A
750.7
Sample A
741.0
Sample A
716.5
Sample A
736.7
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The Human Protein Atlas project is funded
