MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:328.9 nTPM
HPA Brain:735.7 nTPM
GTEx:328.9 nTPM
FANTOM5:536.3 Scaled Tags Per Million
Pig:757.5 nTPM
Mouse:604.3 nTPM
Allen mouse:11.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 735.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 495.6
2586 Male, age 75, left hemisphere 736.9
2828 Female, age 72, unknown 716.0
2666 Male, age 74, left hemisphere 529.6
1827 Male, age 72, unknown 490.5
1833 Male, age 53, unknown 483.9
2411 Female, age 72, unknown 430.8
1870 Female, age 42, unknown 424.7
1830 Male, age 51, unknown 420.1
2219 Male, age 76, both hemispheres 373.3
2019 Male, age 18, unknown 350.3
Dorsal raphe nucleus
nTPM: 600.9
1828 Male, age 53, unknown 743.3
2047 Male, age 72, unknown 695.2
2016 Female, age 72, unknown 611.0
2298 Female, age 72, unknown 516.4
2750 Male, age 76, both hemispheres 438.9
Inferior colliculus
nTPM: 735.7
1848 Female, age 42, unknown 779.8
1890 Male, age 53, unknown 726.5
2849 Male, age 72, unknown 721.6
2097 Female, age 72, unknown 715.0
Median raphe nucleus
nTPM: 394.5
2220 Male, age 76, midline 394.5
Periaquaductal grey, anterior
nTPM: 561.2
2502 Female, age 75, unknown 595.6
1947 Male, age 18, unknown 580.9
1795 Male, age 51, unknown 506.9
Periaquaductal grey, dorsal
nTPM: 577.2
1840 Male, age 53, unknown 651.6
2464 Female, age 72, unknown 627.8
2850 Male, age 76, both hemispheres 585.3
1831 Male, age 72, unknown 444.2
Periaquaductal grey, lateral
nTPM: 498.2
2053 Male, age 18, unknown 608.9
2140 Male, age 76, both hemispheres 598.7
2272 Male, age 74, both hemispheres 287.0
Pretectal area
nTPM: 530.7
1817 Female, age 42, unknown 739.6
2667 Female, age 75, unknown 695.7
1816 Male, age 51, unknown 612.0
2825 Male, age 18, unknown 607.0
1944 Female, age 72, unknown 595.8
1815 Male, age 53, unknown 511.1
2316 Male, age 76, right hemisphere 456.4
2224 Female, age 72, unknown 453.9
2007 Male, age 72, unknown 419.8
2407 Male, age 75, both hemispheres 377.2
2273 Male, age 74, both hemispheres 368.8
Red nucleus
nTPM: 640.6
1821 Female, age 72, unknown 776.2
1954 Female, age 42, unknown 763.9
2503 Female, age 72, unknown 757.0
2588 Male, age 74, left hemisphere 747.5
2823 Male, age 76, right hemisphere 725.6
2227 Male, age 72, unknown 704.8
2769 Male, age 72, unknown 703.0
2725 Female, age 75, unknown 599.0
1865 Male, age 51, unknown 594.7
1904 Male, age 53, unknown 594.1
2584 Male, age 75, left hemisphere 382.7
2785 Male, age 18, unknown 338.7
Substantia nigra
nTPM: 564.3
2699 Male, age 18, unknown 811.9
1916 Female, age 42, unknown 650.3
1889 Female, age 72, unknown 602.7
2665 Male, age 74, both hemispheres 601.1
2241 Male, age 72, unknown 598.7
1851 Male, age 51, unknown 544.1
2409 Female, age 72, unknown 526.7
2583 Male, age 75, right hemisphere 446.3
1941 Male, age 53, unknown 434.5
2590 Female, age 75, unknown 426.8
Superior colliculus
nTPM: 518.8
2664 Male, age 75, both hemispheres 690.3
2087 Female, age 72, unknown 615.2
1839 Male, age 51, unknown 570.6
2261 Male, age 18, unknown 558.5
1796 Male, age 53, unknown 497.2
1995 Male, age 72, unknown 495.6
2668 Female, age 75, unknown 480.9
1895 Male, age 76, right hemisphere 461.2
2587 Male, age 74, left hemisphere 444.4
1913 Female, age 42, unknown 374.2
Ventral tegmental area
nTPM: 471.0
2410 Female, age 72, unknown 559.3
1915 Female, age 42, unknown 480.8
1942 Male, age 51, unknown 477.7
2218 Male, age 76, both hemispheres 455.7
2021 Male, age 53, unknown 455.4
2223 Female, age 72, unknown 397.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 328.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 328.9
Samples: 183

Max nTPM: 1395.3
Min nTPM: 46.5
Std nTPM: 198.1
Median nTPM: 286.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1395.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 1140.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 839.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 822.2
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 780.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 762.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 737.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 716.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 704.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 653.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 649.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 536.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 536.3
FF:10158-103A5 76 years, female 536.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 757.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 523.2
Samples: 4

Max nTPM: 613.9
Min nTPM: 415.9
Sample A Female 415.9
Sample B Female 595.8
Sample C Male 467.1
Sample D Male 613.9
Midbrain
nTPM: 489.5
Samples: 4

Max nTPM: 606.0
Min nTPM: 300.8
Sample A Female 300.8
Sample B Female 483.6
Sample C Male 606.0
Sample D Male 567.7
Periaqueductal gray
nTPM: 446.4
Samples: 3

Max nTPM: 503.8
Min nTPM: 377.4
Sample B Female 503.8
Sample C Male 458.0
Sample D Male 377.4
Superior colliculi
nTPM: 757.5
Samples: 4

Max nTPM: 1065.2
Min nTPM: 563.5
Sample A Female 803.4
Sample B Female 1065.2
Sample C Male 597.8
Sample D Male 563.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 604.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 604.3
Samples: 4

Max nTPM: 645.7
Min nTPM: 562.0
Sample A Male 582.4
Sample B Male 562.0
Sample C Female 627.1
Sample D Female 645.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.1
69173256 Antisense, RP_050329_01_C04, Mouse strain C57BL/6J (56 days, male) 11.1

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