We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PLEKHB1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • PLEKHB1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:948.7 nTPM
HPA Brain:890.2 nTPM
GTEx:948.7 nTPM
FANTOM5:798.0 Scaled Tags Per Million
Pig:250.6 nTPM
Mouse:216.4 nTPM
Allen mouse:2.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

890.2
Sample id Sample description nTPM
Amygdala
nTPM: 890.2
2695 Female, age 67, right hemisphere 1361.1
2814 Male, age 76, right hemisphere 1017.1
2514 Male, age 75, right hemisphere 729.9
1987 Female, age 91, left hemisphere 720.3
2517 Female, age 94, left hemisphere 622.7
Basal amygdala
nTPM: 712.2
2827 Female, age 67, right hemisphere 936.9
2609 Male, age 75, right hemisphere 925.8
2110 Male, age 80, left hemisphere 650.3
2243 Female, age 91, right hemisphere 597.9
1955 Male, age 76, both hemispheres 594.3
2685 Female, age 94, left hemisphere 568.3
Central amygdala
nTPM: 851.2
2826 Female, age 94, left hemisphere 1198.0
2515 Male, age 75, right hemisphere 838.3
1905 Male, age 76, both hemispheres 824.6
2701 Female, age 91, right hemisphere 706.2
2239 Male, age 80, left hemisphere 689.1
Corticomedial amygdala
nTPM: 577.5
2428 Male, age 75, right hemisphere 749.8
2829 Male, age 80, left hemisphere 659.2
2535 Female, age 67, right hemisphere 601.1
2242 Female, age 91, right hemisphere 518.3
2240 Male, age 76, both hemispheres 496.7
2429 Female, age 94, left hemisphere 439.7
Lateral amygdala
nTPM: 882.8
2830 Female, age 67, right hemisphere 1316.4
2516 Male, age 75, right hemisphere 1064.6
1883 Male, age 76, both hemispheres 807.8
2256 Male, age 80, left hemisphere 784.4
2534 Female, age 94, left hemisphere 694.8
2255 Female, age 91, right hemisphere 629.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

948.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 948.7
Samples: 181

Max nTPM: 1983.9
Min nTPM: 285.4
Std nTPM: 373.7
Median nTPM: 853.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1983.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1958.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1901.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1890.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1868.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1852.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1807.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1770.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1748.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1737.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1710.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1701.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1689.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1617.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1584.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1569.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1538.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1481.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1477.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1433.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1419.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1417.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1415.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1408.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1405.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1374.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1357.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1354.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1351.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1335.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1324.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1322.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1310.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1267.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1253.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1238.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1233.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1230.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1222.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1207.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1195.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1190.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1188.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1182.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1171.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1169.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1160.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1158.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1153.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1131.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1123.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1111.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1098.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1094.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1069.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1066.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1066.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1062.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1062.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1050.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1043.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1040.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1033.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1029.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1016.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1011.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1009.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1005.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 998.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 991.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 990.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 976.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 973.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 968.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 967.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 967.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 964.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 959.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 951.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 947.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 934.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 920.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 918.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 916.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 897.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 893.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 885.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 858.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 857.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 854.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 853.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 853.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 853.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 853.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 851.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 841.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 841.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 835.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 833.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 830.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 826.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 822.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 806.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 805.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 798.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 797.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 795.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 793.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 769.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 758.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 752.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 745.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 741.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 740.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 734.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 727.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 727.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 725.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 723.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 722.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 722.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 713.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 712.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 710.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 710.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 709.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 706.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 702.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 699.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 699.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 693.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 682.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 681.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 680.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 671.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 670.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 667.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 659.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 659.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 654.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 644.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 639.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 636.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 625.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 624.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 624.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 616.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 609.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 604.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 601.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 592.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 591.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 588.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 587.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 587.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 583.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 583.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 569.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 566.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 560.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 560.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 559.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 559.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 555.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 545.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 510.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 509.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 507.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 502.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 500.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 497.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 492.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 482.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 470.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 465.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 459.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 440.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 401.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 381.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 353.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 285.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

798.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 798.0
FF:10151-102I7 76 years, female 798.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

250.6
Pig sample Sample description nTPM
Amygdala
nTPM: 250.6
Samples: 4

Max nTPM: 318.1
Min nTPM: 171.8
Sample A Female 223.5
Sample B Female 318.1
Sample C Male 289.0
Sample D Male 171.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

216.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 216.4
Samples: 4

Max nTPM: 316.9
Min nTPM: 180.5
Sample A Male 183.8
Sample B Male 184.5
Sample C Female 316.9
Sample D Female 180.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.0
71836842 Antisense, RP_051017_02_C05, Mouse strain C57BL/6J (56 days, male) 3.4
68196931 Antisense, RP_041116_01_F10, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo