MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1707.8 nTPM
HPA Brain:1403.6 nTPM
GTEx:1707.8 nTPM
FANTOM5:1607.2 Scaled Tags Per Million
Pig:885.6 nTPM
Mouse:697.2 nTPM
Allen mouse:4.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 1403.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1116.7
2828 Female, age 72, unknown 1309.4
1870 Female, age 42, unknown 1301.8
1830 Male, age 51, unknown 1239.6
1833 Male, age 53, unknown 1221.2
2411 Female, age 72, unknown 1145.2
2666 Male, age 74, left hemisphere 1132.3
2586 Male, age 75, left hemisphere 1041.1
2019 Male, age 18, unknown 1040.7
1827 Male, age 72, unknown 928.9
2219 Male, age 76, both hemispheres 806.5
Dorsal raphe nucleus
nTPM: 1036.0
2750 Male, age 76, both hemispheres 1395.2
2016 Female, age 72, unknown 1151.1
1828 Male, age 53, unknown 981.4
2047 Male, age 72, unknown 869.8
2298 Female, age 72, unknown 782.6
Inferior colliculus
nTPM: 846.5
2849 Male, age 72, unknown 924.7
1890 Male, age 53, unknown 885.7
1848 Female, age 42, unknown 852.5
2097 Female, age 72, unknown 723.1
Median raphe nucleus
nTPM: 1018.1
2220 Male, age 76, midline 1018.1
Periaquaductal grey, anterior
nTPM: 786.4
2502 Female, age 75, unknown 834.1
1795 Male, age 51, unknown 791.3
1947 Male, age 18, unknown 733.9
Periaquaductal grey, dorsal
nTPM: 855.9
2464 Female, age 72, unknown 952.8
2850 Male, age 76, both hemispheres 884.8
1831 Male, age 72, unknown 848.7
1840 Male, age 53, unknown 737.3
Periaquaductal grey, lateral
nTPM: 846.9
2053 Male, age 18, unknown 1003.3
2140 Male, age 76, both hemispheres 807.3
2272 Male, age 74, both hemispheres 730.2
Pretectal area
nTPM: 816.8
2316 Male, age 76, right hemisphere 1034.7
1815 Male, age 53, unknown 1026.6
2825 Male, age 18, unknown 966.4
1817 Female, age 42, unknown 821.3
2667 Female, age 75, unknown 798.5
2407 Male, age 75, both hemispheres 780.5
2224 Female, age 72, unknown 778.1
2273 Male, age 74, both hemispheres 760.3
1944 Female, age 72, unknown 712.2
2007 Male, age 72, unknown 689.2
1816 Male, age 51, unknown 616.9
Red nucleus
nTPM: 1403.6
2503 Female, age 72, unknown 1682.4
2769 Male, age 72, unknown 1581.3
2227 Male, age 72, unknown 1558.9
2823 Male, age 76, right hemisphere 1539.8
1904 Male, age 53, unknown 1532.6
1865 Male, age 51, unknown 1475.7
1821 Female, age 72, unknown 1453.8
2588 Male, age 74, left hemisphere 1406.6
1954 Female, age 42, unknown 1268.0
2785 Male, age 18, unknown 1213.4
2584 Male, age 75, left hemisphere 1081.3
2725 Female, age 75, unknown 1049.8
Substantia nigra
nTPM: 1014.6
2699 Male, age 18, unknown 1301.2
2665 Male, age 74, both hemispheres 1125.5
2590 Female, age 75, unknown 1122.2
1851 Male, age 51, unknown 1117.3
2583 Male, age 75, right hemisphere 993.1
1916 Female, age 42, unknown 946.9
2409 Female, age 72, unknown 941.6
1889 Female, age 72, unknown 918.9
1941 Male, age 53, unknown 840.3
2241 Male, age 72, unknown 839.2
Superior colliculus
nTPM: 995.1
1913 Female, age 42, unknown 1439.8
1995 Male, age 72, unknown 1348.3
2668 Female, age 75, unknown 1091.2
2587 Male, age 74, left hemisphere 1077.2
1839 Male, age 51, unknown 1008.6
1895 Male, age 76, right hemisphere 896.0
1796 Male, age 53, unknown 870.2
2664 Male, age 75, both hemispheres 816.8
2087 Female, age 72, unknown 724.0
2261 Male, age 18, unknown 679.2
Ventral tegmental area
nTPM: 1103.8
2223 Female, age 72, unknown 1368.1
2410 Female, age 72, unknown 1192.4
2021 Male, age 53, unknown 1068.0
1942 Male, age 51, unknown 1030.1
1915 Female, age 42, unknown 990.7
2218 Male, age 76, both hemispheres 973.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1707.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1707.8
Samples: 183

Max nTPM: 4324.3
Min nTPM: 104.4
Std nTPM: 735.4
Median nTPM: 1584.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 4324.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3955.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3780.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 3283.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 3266.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3241.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 3205.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 3108.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 3100.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 3042.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 3025.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1607.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1607.2
FF:10158-103A5 76 years, female 1607.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 885.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 820.7
Samples: 4

Max nTPM: 1130.8
Min nTPM: 572.2
Sample A Female 819.8
Sample B Female 572.2
Sample C Male 760.1
Sample D Male 1130.8
Midbrain
nTPM: 885.6
Samples: 4

Max nTPM: 1638.5
Min nTPM: 466.8
Sample A Female 1638.5
Sample B Female 966.9
Sample C Male 470.3
Sample D Male 466.8
Periaqueductal gray
nTPM: 789.3
Samples: 3

Max nTPM: 820.8
Min nTPM: 769.6
Sample B Female 820.8
Sample C Male 777.6
Sample D Male 769.6
Superior colliculi
nTPM: 645.5
Samples: 4

Max nTPM: 775.2
Min nTPM: 413.9
Sample A Female 699.2
Sample B Female 413.9
Sample C Male 693.8
Sample D Male 775.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 697.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 697.2
Samples: 4

Max nTPM: 761.2
Min nTPM: 658.4
Sample A Male 761.2
Sample B Male 658.4
Sample C Female 660.8
Sample D Female 708.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
71836842 Antisense, RP_051017_02_C05, Mouse strain C57BL/6J (56 days, male) 7.2
68196931 Antisense, RP_041116_01_F10, Mouse strain C57BL/6J (56 days, male) 1.3

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