On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1707.8
nTPM
HPA Brain:
1408.7
nTPM
GTEx:
1707.8
nTPM
FANTOM5:
1607.2
Scaled Tags Per Million
Macaque:
572.5
nTPM
Mouse:
671.3
nTPM
Rat:
226.8
nTPM
Pig:
791.1
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1408.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 1120.3
2828
Female, age 72, unknown
1314.2
1870
Female, age 42, unknown
1305.8
1830
Male, age 51, unknown
1243.8
1833
Male, age 53, unknown
1225.9
2411
Female, age 72, unknown
1149.5
2666
Male, age 74, left hemisphere
1137.4
2019
Male, age 18, unknown
1044.2
2586
Male, age 75, left hemisphere
1037.6
1827
Male, age 72, unknown
932.4
2219
Male, age 76, both hemispheres
812.4
Dorsal raphe nucleus nTPM: 1041.0
2750
Male, age 76, both hemispheres
1405.3
2016
Female, age 72, unknown
1156.0
1828
Male, age 53, unknown
985.3
2047
Male, age 72, unknown
872.7
2298
Female, age 72, unknown
785.9
Inferior colliculus nTPM: 849.7
2849
Male, age 72, unknown
928.4
1890
Male, age 53, unknown
889.1
1848
Female, age 42, unknown
855.4
2097
Female, age 72, unknown
726.0
Median raphe nucleus nTPM: 1025.3
2220
Male, age 76, midline
1025.3
Periaquaductal grey, anterior nTPM: 789.2
2502
Female, age 75, unknown
837.0
1795
Male, age 51, unknown
794.2
1947
Male, age 18, unknown
736.5
Periaquaductal grey, dorsal nTPM: 860.0
2464
Female, age 72, unknown
956.4
2850
Male, age 76, both hemispheres
891.5
1831
Male, age 72, unknown
852.0
1840
Male, age 53, unknown
739.9
Periaquaductal grey, lateral nTPM: 851.4
2053
Male, age 18, unknown
1007.0
2140
Male, age 76, both hemispheres
813.5
2272
Male, age 74, both hemispheres
733.7
Pretectal area nTPM: 819.6
2316
Male, age 76, right hemisphere
1042.4
1815
Male, age 53, unknown
1029.9
2825
Male, age 18, unknown
969.9
1817
Female, age 42, unknown
824.1
2667
Female, age 75, unknown
801.0
2224
Female, age 72, unknown
781.4
2407
Male, age 75, both hemispheres
778.3
2273
Male, age 74, both hemispheres
763.9
1944
Female, age 72, unknown
714.6
2007
Male, age 72, unknown
691.9
1816
Male, age 51, unknown
618.7
Red nucleus nTPM: 1408.7
2503
Female, age 72, unknown
1688.1
2769
Male, age 72, unknown
1587.4
2227
Male, age 72, unknown
1564.3
2823
Male, age 76, right hemisphere
1551.3
1904
Male, age 53, unknown
1539.5
1865
Male, age 51, unknown
1481.1
1821
Female, age 72, unknown
1458.8
2588
Male, age 74, left hemisphere
1411.9
1954
Female, age 42, unknown
1272.5
2785
Male, age 18, unknown
1218.1
2584
Male, age 75, left hemisphere
1077.9
2725
Female, age 75, unknown
1053.7
Substantia nigra nTPM: 1017.7
2699
Male, age 18, unknown
1306.3
2665
Male, age 74, both hemispheres
1130.9
2590
Female, age 75, unknown
1125.6
1851
Male, age 51, unknown
1121.3
2583
Male, age 75, right hemisphere
989.4
1916
Female, age 42, unknown
950.8
2409
Female, age 72, unknown
944.9
1889
Female, age 72, unknown
922.6
1941
Male, age 53, unknown
843.2
2241
Male, age 72, unknown
842.0
Superior colliculus nTPM: 998.7
1913
Female, age 42, unknown
1445.5
1995
Male, age 72, unknown
1353.4
2668
Female, age 75, unknown
1095.1
2587
Male, age 74, left hemisphere
1082.1
1839
Male, age 51, unknown
1012.2
1895
Male, age 76, right hemisphere
902.3
1796
Male, age 53, unknown
873.6
2664
Male, age 75, both hemispheres
814.4
2087
Female, age 72, unknown
726.6
2261
Male, age 18, unknown
681.6
Ventral tegmental area nTPM: 1108.5
2223
Female, age 72, unknown
1373.1
2410
Female, age 72, unknown
1197.5
2021
Male, age 53, unknown
1072.0
1942
Male, age 51, unknown
1033.8
1915
Female, age 42, unknown
994.2
2218
Male, age 76, both hemispheres
980.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1707.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1707.8
Samples: 183
Max nTPM: 4324.3
Min nTPM: 104.4
Std nTPM: 735.4
Median nTPM: 1584.1
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
4324.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
3955.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
3780.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
3283.3
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
3266.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
3241.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
3205.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
3108.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
3100.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
3042.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
3025.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
2993.1
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
2958.1
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
2901.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
2881.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
2878.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
2872.0
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
2719.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
2709.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
2706.4
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
2608.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
2593.8
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
2588.8
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
2578.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
2576.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
2546.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
2509.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
2502.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
2498.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
2440.7
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
2389.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
2365.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
2362.1
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
2349.5
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
2345.1
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
2316.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
2314.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
2282.8
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
2266.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
2264.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
2211.6
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
2200.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
2194.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
2165.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
2162.6
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
2148.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
2137.4
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
2114.3
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
2100.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
2097.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
2086.1
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
2025.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
2014.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
2012.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
2006.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
2004.1
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
1994.8
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
1984.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1981.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1965.7
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
1936.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
1933.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1929.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1923.8
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
1901.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1888.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1863.1
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
1862.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1851.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
1851.1
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1836.4
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
1832.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1831.0
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
1805.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1788.9
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
1765.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1751.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1748.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1738.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
1735.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1732.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1723.8
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
1689.6
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
1668.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1659.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1656.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1647.3
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
1644.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
1643.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1629.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1596.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1584.1
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
1563.1
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1562.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
1535.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
1533.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1523.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1515.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
1512.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1507.4
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
1485.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1479.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1478.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1470.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
1464.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1464.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1443.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1437.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
1428.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
1424.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1423.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1420.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
1412.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
1400.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
1391.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1381.8
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
1373.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
1369.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
1359.9
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
1346.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1343.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1326.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1317.6
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
1298.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1290.7
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
1290.3
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
1281.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
1272.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1263.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1246.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1242.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
1239.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1229.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1213.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
1213.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1204.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1204.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1156.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1155.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1154.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
1151.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
1145.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1126.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
1122.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1116.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
1107.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1091.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
1081.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1076.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1071.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
1066.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
1051.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1050.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1017.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
1016.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
1012.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
1010.5
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
993.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
992.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
973.1
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
969.1
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
962.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
936.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
916.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
887.3
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
873.1
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
851.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
815.5
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
731.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
731.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
725.2
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
694.7
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
693.0
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
692.5
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
663.9
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
603.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
593.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
554.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
495.1
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
492.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
414.7
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
285.3
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
104.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
572.5
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 572.5
Samples: 1
Max nTPM: 572.5
Min nTPM: 572.5
Sample A
572.5
Midbrain nTPM: 293.7
Samples: 1
Max nTPM: 293.7
Min nTPM: 293.7
Sample A
293.7
Superior colliculi nTPM: 355.3
Samples: 1
Max nTPM: 355.3
Min nTPM: 355.3
Sample A
355.3
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
791.1
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 721.0
Samples: 3
Max nTPM: 825.1
Min nTPM: 574.2
Sample A
Female
825.1
Sample B
Female
574.2
Sample C
Male
763.6
Midbrain nTPM: 636.6
Samples: 3
Max nTPM: 970.5
Min nTPM: 467.7
Sample B
Female
970.5
Sample C
Male
471.7
Sample D
Male
467.7
Periaqueductal gray nTPM: 791.1
Samples: 3
Max nTPM: 823.2
Min nTPM: 771.1
Sample B
Female
823.2
Sample C
Male
779.1
Sample D
Male
771.1
Superior colliculi nTPM: 648.9
Samples: 4
Max nTPM: 779.0
Min nTPM: 415.7
Sample A
Female
703.9
Sample B
Female
415.7
Sample C
Male
697.1
Sample D
Male
779.0
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
671.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 671.3
Samples: 4
Max nTPM: 725.2
Min nTPM: 616.8
Sample A
725.2
Sample B
713.7
Sample C
629.4
Sample D
616.8
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
226.8
Rat sample
Sample description
nTPM
Midbrain nTPM: 226.9
Samples: 4
Max nTPM: 273.0
Min nTPM: 207.3
Sample A
273.0
Sample A
215.2
Sample A
207.3
Sample A
211.9
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The Human Protein Atlas project is funded
