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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:411.1 nTPM
HPA Brain:243.9 nTPM
GTEx:411.1 nTPM
FANTOM5:405.5 Scaled Tags Per Million
Pig:183.9 nTPM
Mouse:26.4 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.9
Sample id Sample description nTPM
Amygdala
nTPM: 243.9
1987 Female, age 91, left hemisphere 402.3
2517 Female, age 94, left hemisphere 281.5
2514 Male, age 75, right hemisphere 263.8
2695 Female, age 67, right hemisphere 169.1
2814 Male, age 76, right hemisphere 102.8
Basal amygdala
nTPM: 194.9
2609 Male, age 75, right hemisphere 236.2
2685 Female, age 94, left hemisphere 231.0
2110 Male, age 80, left hemisphere 183.9
2827 Female, age 67, right hemisphere 179.8
1955 Male, age 76, both hemispheres 171.3
2243 Female, age 91, right hemisphere 167.3
Central amygdala
nTPM: 231.0
2826 Female, age 94, left hemisphere 368.1
2515 Male, age 75, right hemisphere 310.6
2701 Female, age 91, right hemisphere 163.1
1905 Male, age 76, both hemispheres 159.8
2239 Male, age 80, left hemisphere 153.5
Corticomedial amygdala
nTPM: 205.0
2242 Female, age 91, right hemisphere 341.8
2240 Male, age 76, both hemispheres 221.3
2428 Male, age 75, right hemisphere 219.7
2429 Female, age 94, left hemisphere 165.1
2535 Female, age 67, right hemisphere 159.3
2829 Male, age 80, left hemisphere 122.9
Lateral amygdala
nTPM: 224.0
2256 Male, age 80, left hemisphere 303.8
2534 Female, age 94, left hemisphere 278.6
2255 Female, age 91, right hemisphere 215.1
2830 Female, age 67, right hemisphere 204.6
2516 Male, age 75, right hemisphere 186.8
1883 Male, age 76, both hemispheres 155.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

411.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 411.1
Samples: 181

Max nTPM: 1188.2
Min nTPM: 82.7
Std nTPM: 199.7
Median nTPM: 369.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1188.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1163.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1090.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1086.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1039.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 942.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 852.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 852.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 840.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 834.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 795.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 767.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 757.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 716.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 715.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 707.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 697.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 678.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 678.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 676.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 676.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 646.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 624.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 603.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 599.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 597.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 597.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 571.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 562.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 562.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 555.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 552.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 549.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 539.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 532.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 527.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 520.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 520.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 516.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 503.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 494.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 493.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 489.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 488.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 488.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 487.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 485.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 483.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 482.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 466.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 464.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 460.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 460.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 458.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 451.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 448.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 445.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 444.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 438.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 436.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 434.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 434.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 431.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 426.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 413.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 413.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 411.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 410.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 409.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 408.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 407.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 403.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 401.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 400.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 399.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 397.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 395.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 393.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 390.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 388.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 386.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 384.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 383.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 377.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 374.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 371.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 370.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 370.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 369.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 369.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 369.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 368.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 367.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 364.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 362.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 359.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 349.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 347.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 346.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 345.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 343.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 342.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 341.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 341.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 333.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 332.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 331.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 330.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 329.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 329.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 328.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 321.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 318.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 313.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 311.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 308.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 304.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 300.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 299.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 299.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 297.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 296.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 294.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 293.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 290.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 290.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 290.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 287.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 284.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 283.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 279.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 279.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 279.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 275.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 274.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 273.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 273.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 272.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 271.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 269.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 268.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 267.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 265.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 262.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 262.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 259.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 257.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 256.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 256.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 253.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 253.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 249.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 249.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 242.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 241.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 240.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 239.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 235.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 235.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 234.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 234.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 229.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 229.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 225.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 222.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 217.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 214.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 210.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 207.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 206.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 195.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 189.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 185.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 181.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 168.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 166.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 163.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 162.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 153.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 90.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 82.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

405.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 405.5
FF:10151-102I7 76 years, female 405.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.9
Pig sample Sample description nTPM
Amygdala
nTPM: 183.9
Samples: 4

Max nTPM: 224.8
Min nTPM: 143.3
Sample A Female 224.8
Sample B Female 143.3
Sample C Male 210.6
Sample D Male 156.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 26.4
Samples: 4

Max nTPM: 29.3
Min nTPM: 23.5
Sample A Male 27.3
Sample B Male 23.5
Sample C Female 25.5
Sample D Female 29.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.1
79677375 Antisense, RP_071218_02_C11, Mouse strain C57BL/6J (56 days, male) 1.6
79677371 Antisense, RP_071218_02_C05, Mouse strain C57BL/6J (56 days, male) 1.4
79907904 Antisense, RP_071218_02_C05, Mouse strain C57BL/6J (56 days, male) 0.5
1310 Antisense, RP_Baylor_103104, Mouse strain C57BL/6J (56 days, male) 0.3
1309 Antisense, RP_Baylor_103104, Mouse strain C57BL/6J (56 days, male) 0.1

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