On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
411.1
nTPM
HPA Brain:
232.5
nTPM
GTEx:
411.1
nTPM
FANTOM5:
405.5
Scaled Tags Per Million
Macaque:
40.6
nTPM
Mouse:
21.2
nTPM
Rat:
43.1
nTPM
Pig:
184.3
nTPM
AMYGDALA - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - AMYGDALA, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RXFP1+ ...
c-2
Excitatory (VGLUT1/2)
c-3
Inhibitory (GAD1/2) CXCL14+...
c-4
Excitatory (VGLUT1/2)
c-5
Excitatory (VGLUT1/2)
c-6
Inhibitory (GAD1/2) CXCL14+...
c-7
Excitatory (VGLUT1/2)
c-8
Excitatory (VGLUT1/2)
c-9
Excitatory (VGLUT1)
c-10
Excitatory (VGLUT1)
c-11
Inhibitory (GAD1/2)
c-12
Inhibitory (GAD1/2) SST+ LH...
c-13
Excitatory (VGLUT2)
c-14
Inhibitory (GAD1/2) KIT+ LA...
c-15
Inhibitory (GAD1/2) TAC1+ L...
c-16
Excitatory (VGLUT1/2)
c-17
Inhibitory (GAD1/2) TSHZ1+
c-18
Excitatory (VGLUT1/2)
c-19
Inhibitory (GAD1/2) CXCL14+...
c-20
Excitatory (VGLUT1/2)
c-21
Excitatory (VGLUT1/2)
c-22
Excitatory (VGLUT1)
c-23
Unassigned
c-24
Inhibitory (GAD1/2) PENK+ D...
c-25
Excitatory (VGLUT1/2)
c-26
Inhibitory (GAD1/2) CXCL14+...
c-27
Inhibitory (GAD1/2) LHX6+ E...
c-28
Excitatory (VGLUT1/2) SATB2...
c-29
Inhibitory (GAD1) LHX6+
c-30
Excitatory (VGLUT1/2)
c-31
Excitatory (VGLUT1/2)
c-32
Excitatory (VGLUT1)
c-33
Inhibitory (GAD1/2) TAC1+ P...
c-34
Excitatory (VGLUT1/2)
c-35
Excitatory (VGLUT1/2) ETV1+...
c-36
Inhibitory (GAD1/2) PENK+
c-37
Excitatory (VGLUT1/2)
c-38
Excitatory (VGLUT1) FOXP2+
c-39
Excitatory (VGLUT1/2)
c-40
Excitatory (VGLUT1) SOX5+
c-41
Inhibitory (GAD1/2) NOS1+ M...
c-42
Inhibitory (GAD1/2) NOS1+ S...
c-43
Excitatory (VGLUT1/2) ETV1+
c-44
Excitatory (VGLUT1/2) NOS1+
c-45
Excitatory (VGLUT2)
c-46
Excitatory (VGLUT1)
c-47
Serotonergic Inhibitory (GA...
c-48
Excitatory (VGLUT1) FOXP2+ ...
c-49
Excitatory (VGLUT1)
c-50
Inhibitory (GAD1/2) RORB+ K
c-51
CALB2+
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - AMYGDALA, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Astrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocyte progenitor ...
c-7
Microglia
c-8
Oligodendrocytes
c-9
Astrocytes
c-10
Astrocytes (CD44+)
c-11
Microglia
c-12
Oligodendrocyte progenitor ...
c-13
Astrocytes
c-14
Oligodendrocytes
c-15
Astrocytes
c-16
Oligodendrocytes
c-17
Oligodendrocytes
c-18
Fibroblasts
c-19
Ependymal cells
c-20
Mural cells & vECs
c-21
Macrophages
c-22
Immature oligodendrocytes
c-23
Pericytes
c-24
NK-cells & T-cells
c-25
Oligodendrocyte progenitor ...
c-26
Vascular smooth muscle cell
c-27
Fibroblasts (BNC2+ KCNMA1+ ...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
232.5
Sample id
Sample description
nTPM
Basal amygdala nTPM: 195.7
2609
Male, age 75, right hemisphere
236.0
2685
Female, age 94, left hemisphere
233.8
2110
Male, age 80, left hemisphere
184.6
2827
Female, age 67, right hemisphere
178.8
1955
Male, age 76, both hemispheres
171.5
2243
Female, age 91, right hemisphere
169.5
Central amygdala nTPM: 232.5
2826
Female, age 94, left hemisphere
372.5
2515
Male, age 75, right hemisphere
310.3
2701
Female, age 91, right hemisphere
165.4
1905
Male, age 76, both hemispheres
160.0
2239
Male, age 80, left hemisphere
154.1
Corticomedial amygdala nTPM: 206.0
2242
Female, age 91, right hemisphere
346.2
2240
Male, age 76, both hemispheres
221.7
2428
Male, age 75, right hemisphere
219.4
2429
Female, age 94, left hemisphere
167.0
2535
Female, age 67, right hemisphere
158.3
2829
Male, age 80, left hemisphere
123.4
Lateral amygdala nTPM: 225.0
2256
Male, age 80, left hemisphere
304.9
2534
Female, age 94, left hemisphere
281.8
2255
Female, age 91, right hemisphere
217.8
2830
Female, age 67, right hemisphere
203.2
2516
Male, age 75, right hemisphere
186.6
1883
Male, age 76, both hemispheres
155.3
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
411.1
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 411.1
Samples: 181
Max nTPM: 1188.2
Min nTPM: 82.7
Std nTPM: 199.7
Median nTPM: 369.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
1188.2
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
1163.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
1090.5
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
1086.3
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
1039.6
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
942.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
852.9
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
852.4
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
840.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
834.3
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
795.2
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
767.3
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
757.2
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
716.1
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
715.8
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
707.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
697.2
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
678.7
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
678.4
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
676.6
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
676.0
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
646.3
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
624.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
603.0
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
599.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
597.6
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
597.2
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
571.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
562.6
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
562.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
555.3
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
552.3
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
549.6
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
539.7
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
532.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
527.6
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
520.4
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
520.2
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
516.8
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
503.1
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
494.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
493.6
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
489.9
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
488.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
488.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
487.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
485.6
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
483.4
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
482.7
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
466.9
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
464.3
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
460.8
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
460.3
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
458.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
451.8
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
448.0
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
445.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
444.2
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
438.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
436.9
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
434.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
434.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
431.3
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
426.8
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
413.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
413.2
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
411.3
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
410.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
409.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
408.1
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
407.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
403.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
401.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
400.7
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
399.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
397.7
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
395.2
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
393.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
390.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
388.6
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
386.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
384.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
383.2
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
377.2
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
374.3
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
371.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
370.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
370.6
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
369.8
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
369.3
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
369.3
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
368.0
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
367.3
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
364.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
362.6
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
359.8
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
349.4
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
347.3
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
346.9
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
345.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
343.1
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
342.7
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
341.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
341.0
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
333.1
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
332.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
331.4
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
330.2
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
329.8
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
329.0
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
328.7
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
321.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
318.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
313.7
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
311.4
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
308.9
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
304.4
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
300.5
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
299.8
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
299.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
297.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
296.3
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
294.4
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
293.7
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
290.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
290.6
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
290.5
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
287.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
284.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
283.1
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
279.9
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
279.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
279.5
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
275.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
274.1
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
273.5
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
273.2
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
272.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
271.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
269.2
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
268.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
267.8
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
265.2
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
262.6
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
262.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
259.8
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
257.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
256.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
256.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
253.2
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
253.1
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
249.5
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
249.4
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
242.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
241.8
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
240.2
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
239.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
235.8
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
235.7
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
234.6
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
234.5
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
229.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
229.1
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
225.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
222.3
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
217.6
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
214.8
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
210.8
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
207.3
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
206.7
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
195.4
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
189.9
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
185.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
181.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
168.9
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
166.1
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
163.1
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
162.7
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
153.0
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
90.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
82.7
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
40.6
Macaque sample
Sample description
nTPM
Amygdala nTPM: 40.6
Samples: 2
Max nTPM: 47.1
Min nTPM: 34.1
Sample A
34.1
Sample B
47.1
AMYGDALA - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
184.3
Pig sample
Sample description
nTPM
Amygdala nTPM: 184.3
Samples: 4
Max nTPM: 225.6
Min nTPM: 143.7
Sample A
Female
225.6
Sample B
Female
143.7
Sample C
Male
210.9
Sample D
Male
157.0
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.2
Mouse sample
Sample description
nTPM
Amygdala nTPM: 21.2
Samples: 4
Max nTPM: 24.4
Min nTPM: 17.9
Sample A
24.4
Sample B
20.3
Sample C
17.9
Sample D
22.3
AMYGDALA - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
43.1
Rat sample
Sample description
nTPM
Amygdala nTPM: 43.1
Samples: 4
Max nTPM: 50.5
Min nTPM: 39.3
Sample A
50.5
Sample A
40.7
Sample A
41.9
Sample A
39.3
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The Human Protein Atlas project is funded
