On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
358.5
nTPM
HPA Brain:
408.0
nTPM
GTEx:
358.5
nTPM
FANTOM5:
966.5
Scaled Tags Per Million
Macaque:
195.7
nTPM
Mouse:
34.2
nTPM
Rat:
177.7
nTPM
Pig:
815.6
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
322273
Sample
Intensity
Spinal cord_01
2736892
Spinal cord_02
445036
Spinal cord_03
624850
Spinal cord_04
226664
Spinal cord_05
267424
Spinal cord_06
377123
Spinal cord_07
215046
Spinal cord_08
190173
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
408.0
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 282.6
2818
Female, age 79, both hemispheres
472.9
2734
Male, age 80, both hemispheres
258.9
2193
Male, age 75, both hemispheres
220.3
2819
Male, age 47, both hemispheres
178.2
Cervical spinal cord, central gray nTPM: 389.2
1981
Female, age 72, midline
537.3
2816
Male, age 47, midline
435.2
2048
Male, age 55, midline
388.4
2565
Male, age 75, midline
362.8
2194
Female, age 79, both hemispheres
222.1
Cervical spinal cord, dorsal horn nTPM: 225.1
2173
Female, age 72, unknown
326.8
2069
Male, age 47, both hemispheres
269.1
2296
Male, age 66, both hemispheres
245.4
2721
Male, age 90, both hemispheres
244.0
1877
Male, age 55, unknown
180.0
2297
Male, age 75, both hemispheres
85.2
Cervical spinal cord, ventral horn nTPM: 311.3
2098
Female, age 72, unknown
1045.0
2809
Male, age 90, both hemispheres
323.6
2068
Male, age 55, unknown
156.4
2480
Male, age 75, both hemispheres
132.3
2295
Male, age 66, both hemispheres
130.6
2820
Female, age 79, both hemispheres
79.7
Dorsal funiculus (white matter) nTPM: 347.3
2064
Female, age 79, both hemispheres
641.6
2817
Male, age 47, both hemispheres
317.1
2128
Male, age 75, both hemispheres
273.2
2810
Male, age 90, both hemispheres
269.4
2812
Male, age 66, both hemispheres
235.0
Lateral funiculus (white matter) nTPM: 408.0
2294
Male, age 66, both hemispheres
659.1
2094
Female, age 79, both hemispheres
530.1
2099
Male, age 90, both hemispheres
233.9
2192
Male, age 75, both hemispheres
208.8
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
358.5
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 358.5
Samples: 204
Max nTPM: 2129.7
Min nTPM: 76.3
Std nTPM: 301.0
Median nTPM: 269.0
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
2129.7
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
2106.2
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
1764.6
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
1662.5
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
1339.7
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
1281.8
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
1153.0
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
1064.7
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
1001.5
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
897.3
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
875.2
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
827.6
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
800.1
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
674.4
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
666.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
664.2
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
628.7
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
613.3
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
606.3
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
591.6
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
590.8
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
585.2
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
581.8
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
581.4
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
579.1
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
577.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
551.9
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
542.2
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
539.0
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
528.9
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
518.4
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
510.4
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
500.2
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
487.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
480.6
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
479.9
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
476.7
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
467.3
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
465.1
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
450.3
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
449.2
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
449.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
449.0
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
446.5
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
446.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
439.0
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
431.3
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
418.9
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
406.3
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
402.0
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
396.4
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
390.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
390.2
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
389.1
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
388.2
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
387.1
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
383.8
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
382.0
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
381.5
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
380.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
372.2
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
367.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
366.9
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
365.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
361.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
356.7
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
351.9
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
351.8
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
346.6
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
344.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
342.9
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
340.4
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
339.0
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
338.6
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
337.2
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
337.1
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
320.9
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
314.9
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
313.2
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
313.2
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
307.3
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
305.4
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
304.4
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
303.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
303.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
298.6
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
297.5
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
295.0
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
294.4
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
292.9
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
290.8
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
287.3
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
287.0
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
285.0
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
279.9
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
278.3
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
275.8
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
275.2
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
273.2
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
272.7
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
271.9
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
270.6
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
267.4
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
266.6
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
266.3
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
258.9
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
257.6
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
256.8
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
256.6
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
256.3
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
254.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
253.9
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
249.9
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
249.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
249.3
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
249.1
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
248.7
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
246.3
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
245.9
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
244.6
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
243.3
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
242.0
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
241.4
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
238.9
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
237.6
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
235.5
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
234.1
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
227.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
227.8
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
227.2
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
227.0
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
224.5
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
222.4
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
221.5
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
221.4
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
221.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
219.8
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
217.6
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
217.3
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
215.7
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
215.5
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
214.9
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
214.7
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
214.4
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
213.7
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
213.4
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
212.7
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
212.3
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
209.4
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
208.2
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
206.8
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
204.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
203.8
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
203.1
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
202.9
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
201.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
201.0
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
200.8
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
198.6
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
191.1
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
188.3
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
187.4
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
183.3
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
181.1
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
180.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
178.3
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
176.5
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
174.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
173.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
169.9
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
169.9
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
169.8
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
169.6
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
169.5
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
168.9
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
167.0
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
166.8
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
166.4
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
162.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
161.8
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
158.3
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
156.7
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
156.3
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
155.1
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
155.0
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
154.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
149.0
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
145.7
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
144.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
142.2
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
134.6
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
133.5
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
130.1
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
127.3
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
123.0
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
122.5
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
119.3
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
108.0
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
104.2
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
103.3
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
102.7
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
101.2
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
89.1
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
76.3
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
195.7
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 59.9
Samples: 2
Max nTPM: 60.0
Min nTPM: 59.8
Sample A
60.0
Sample B
59.8
Ventral spinal cord nTPM: 195.7
Samples: 1
Max nTPM: 195.7
Min nTPM: 195.7
Sample A
195.7
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
815.6
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 815.6
Samples: 4
Max nTPM: 2001.8
Min nTPM: 194.8
Sample A
Female
194.8
Sample B
Female
646.6
Sample C
Male
2001.8
Sample D
Male
419.3
Ventral spinal cord nTPM: 302.8
Samples: 4
Max nTPM: 712.4
Min nTPM: 112.4
Sample A
Female
112.4
Sample B
Female
179.4
Sample C
Male
712.4
Sample D
Male
206.8
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.2
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 34.2
Samples: 4
Max nTPM: 42.2
Min nTPM: 23.2
Sample A
32.6
Sample B
38.6
Sample C
42.2
Sample D
23.2
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
177.7
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 177.7
Samples: 4
Max nTPM: 275.0
Min nTPM: 119.0
Sample A
127.0
Sample A
189.7
Sample A
119.0
Sample A
275.0
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The Human Protein Atlas project is funded
