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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:358.5 nTPM
HPA Brain:388.0 nTPM
GTEx:358.5 nTPM
FANTOM5:966.5 Scaled Tags Per Million
Pig:811.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

388.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 388.0
1981 Female, age 72, midline 534.9
2816 Male, age 47, midline 434.1
2048 Male, age 55, midline 386.4
2565 Male, age 75, midline 363.1
2194 Female, age 79, both hemispheres 221.4
Cervical spinal cord, dorsal horn
nTPM: 224.5
2173 Female, age 72, unknown 325.4
2069 Male, age 47, both hemispheres 268.5
2296 Male, age 66, both hemispheres 245.0
2721 Male, age 90, both hemispheres 243.5
1877 Male, age 55, unknown 179.1
2297 Male, age 75, both hemispheres 85.3
Cervical spinal cord, ventral horn
nTPM: 310.1
2098 Female, age 72, unknown 1040.1
2809 Male, age 90, both hemispheres 322.8
2068 Male, age 55, unknown 155.6
2480 Male, age 75, both hemispheres 132.4
2295 Male, age 66, both hemispheres 130.3
2820 Female, age 79, both hemispheres 79.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

358.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 358.5
Samples: 204

Max nTPM: 2129.7
Min nTPM: 76.3
Std nTPM: 301.0
Median nTPM: 269.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 2129.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 2106.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1764.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1662.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1339.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1281.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1153.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1064.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1001.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 897.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 875.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 827.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 800.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 674.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 666.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 664.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 628.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 613.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 606.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 591.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 590.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 585.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 581.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 581.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 579.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 577.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 551.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 542.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 539.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 528.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 518.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 510.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 500.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 487.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 480.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 479.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 476.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 467.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 465.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 450.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 449.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 449.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 449.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 446.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 446.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 439.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 431.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 418.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 406.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 402.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 396.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 390.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 390.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 389.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 388.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 387.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 383.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 382.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 381.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 380.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 372.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 367.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 366.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 365.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 361.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 356.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 351.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 351.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 346.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 344.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 342.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 340.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 339.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 338.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 337.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 337.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 320.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 314.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 313.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 313.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 307.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 305.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 304.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 303.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 303.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 298.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 297.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 295.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 294.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 292.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 290.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 287.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 287.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 285.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 279.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 278.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 275.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 275.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 273.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 272.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 271.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 270.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 267.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 266.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 266.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 258.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 257.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 256.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 256.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 256.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 254.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 253.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 249.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 249.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 249.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 249.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 248.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 246.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 245.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 244.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 243.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 242.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 241.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 238.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 237.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 235.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 234.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 227.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 227.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 227.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 227.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 224.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 222.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 221.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 221.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 221.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 219.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 217.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 217.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 215.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 215.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 214.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 214.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 214.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 213.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 213.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 212.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 212.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 209.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 208.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 206.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 204.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 203.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 203.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 202.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 201.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 201.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 200.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 198.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 191.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 188.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 187.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 183.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 181.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 180.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 178.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 176.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 174.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 173.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 169.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 169.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 169.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 169.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 169.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 168.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 167.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 166.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 166.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 162.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 161.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 158.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 156.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 156.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 155.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 155.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 154.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 149.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 145.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 144.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 142.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 134.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 133.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 130.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 127.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 123.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 122.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 119.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 108.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 104.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 103.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 102.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 101.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 89.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 76.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

966.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 966.5
FF:10181-103D1 60 years, female 1102.8
FF:10159-103A6 76 years, female 830.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

811.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 811.7
Samples: 4

Max nTPM: 1991.8
Min nTPM: 194.1
Sample A Female 194.1
Sample B Female 643.4
Sample C Male 1991.8
Sample D Male 417.6
Ventral spinal cord
nTPM: 301.4
Samples: 4

Max nTPM: 709.1
Min nTPM: 112.0
Sample A Female 112.0
Sample B Female 178.4
Sample C Male 709.1
Sample D Male 205.9

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