MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:114.8 nTPM
HPA Brain:134.4 nTPM
GTEx:114.8 nTPM
FANTOM5:282.2 Scaled Tags Per Million
Pig:73.7 nTPM
Mouse:65.7 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 134.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 116.6
1870 Female, age 42, unknown 142.8
2411 Female, age 72, unknown 139.7
1833 Male, age 53, unknown 134.5
1830 Male, age 51, unknown 133.3
2019 Male, age 18, unknown 118.4
2828 Female, age 72, unknown 105.9
1827 Male, age 72, unknown 103.9
2666 Male, age 74, left hemisphere 102.3
2219 Male, age 76, both hemispheres 92.9
2586 Male, age 75, left hemisphere 92.3
Dorsal raphe nucleus
nTPM: 118.4
2750 Male, age 76, both hemispheres 142.2
2016 Female, age 72, unknown 120.5
1828 Male, age 53, unknown 119.4
2298 Female, age 72, unknown 115.7
2047 Male, age 72, unknown 94.1
Inferior colliculus
nTPM: 114.9
1848 Female, age 42, unknown 119.9
2849 Male, age 72, unknown 117.1
2097 Female, age 72, unknown 113.3
1890 Male, age 53, unknown 109.0
Median raphe nucleus
nTPM: 105.2
2220 Male, age 76, midline 105.2
Periaquaductal grey, anterior
nTPM: 104.1
1947 Male, age 18, unknown 115.6
2502 Female, age 75, unknown 109.4
1795 Male, age 51, unknown 87.2
Periaquaductal grey, dorsal
nTPM: 106.2
2464 Female, age 72, unknown 116.8
2850 Male, age 76, both hemispheres 114.0
1840 Male, age 53, unknown 98.3
1831 Male, age 72, unknown 95.8
Periaquaductal grey, lateral
nTPM: 111.9
2272 Male, age 74, both hemispheres 116.0
2140 Male, age 76, both hemispheres 111.9
2053 Male, age 18, unknown 107.8
Pretectal area
nTPM: 109.0
2316 Male, age 76, right hemisphere 127.5
2273 Male, age 74, both hemispheres 121.9
1815 Male, age 53, unknown 119.4
2667 Female, age 75, unknown 111.2
1817 Female, age 42, unknown 110.3
2825 Male, age 18, unknown 107.9
2224 Female, age 72, unknown 105.1
2007 Male, age 72, unknown 101.4
1816 Male, age 51, unknown 101.0
1944 Female, age 72, unknown 99.6
2407 Male, age 75, both hemispheres 93.9
Red nucleus
nTPM: 134.4
1904 Male, age 53, unknown 153.2
1821 Female, age 72, unknown 151.5
2823 Male, age 76, right hemisphere 150.0
2227 Male, age 72, unknown 147.5
1865 Male, age 51, unknown 144.5
1954 Female, age 42, unknown 143.5
2769 Male, age 72, unknown 141.5
2503 Female, age 72, unknown 136.6
2785 Male, age 18, unknown 130.5
2725 Female, age 75, unknown 115.3
2588 Male, age 74, left hemisphere 106.9
2584 Male, age 75, left hemisphere 91.9
Substantia nigra
nTPM: 110.2
2241 Male, age 72, unknown 125.9
2590 Female, age 75, unknown 118.2
1889 Female, age 72, unknown 115.7
2409 Female, age 72, unknown 115.1
2699 Male, age 18, unknown 113.4
2583 Male, age 75, right hemisphere 112.4
1851 Male, age 51, unknown 109.2
2665 Male, age 74, both hemispheres 105.6
1916 Female, age 42, unknown 95.4
1941 Male, age 53, unknown 90.9
Superior colliculus
nTPM: 116.6
1913 Female, age 42, unknown 147.0
1995 Male, age 72, unknown 135.9
1895 Male, age 76, right hemisphere 130.7
2587 Male, age 74, left hemisphere 120.7
1839 Male, age 51, unknown 118.2
2668 Female, age 75, unknown 113.5
1796 Male, age 53, unknown 110.6
2087 Female, age 72, unknown 109.5
2261 Male, age 18, unknown 102.8
2664 Male, age 75, both hemispheres 77.1
Ventral tegmental area
nTPM: 111.1
2223 Female, age 72, unknown 124.9
2410 Female, age 72, unknown 122.9
1942 Male, age 51, unknown 109.5
2021 Male, age 53, unknown 104.5
2218 Male, age 76, both hemispheres 103.4
1915 Female, age 42, unknown 101.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 114.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 114.8
Samples: 183

Max nTPM: 210.8
Min nTPM: 54.9
Std nTPM: 31.3
Median nTPM: 111.4
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 210.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 207.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 195.4
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 189.7
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 186.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 180.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 174.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 174.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 173.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 172.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 170.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 282.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 282.2
FF:10158-103A5 76 years, female 282.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 73.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.8
Samples: 4

Max nTPM: 73.2
Min nTPM: 56.2
Sample A Female 69.6
Sample B Female 73.2
Sample C Male 56.2
Sample D Male 64.0
Midbrain
nTPM: 60.5
Samples: 4

Max nTPM: 97.9
Min nTPM: 36.2
Sample A Female 97.9
Sample B Female 59.8
Sample C Male 47.9
Sample D Male 36.2
Periaqueductal gray
nTPM: 52.6
Samples: 3

Max nTPM: 59.8
Min nTPM: 44.2
Sample B Female 59.8
Sample C Male 53.8
Sample D Male 44.2
Superior colliculi
nTPM: 73.7
Samples: 4

Max nTPM: 105.4
Min nTPM: 47.6
Sample A Female 88.0
Sample B Female 105.4
Sample C Male 53.8
Sample D Male 47.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 65.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 65.7
Samples: 4

Max nTPM: 69.6
Min nTPM: 63.3
Sample A Male 64.5
Sample B Male 65.3
Sample C Female 69.6
Sample D Female 63.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
77455062 Antisense, RP_070129_02_A10, Mouse strain C57BL/6J (56 days, male) 0.6

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