On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
124.9
nTPM
HPA Brain:
148.8
nTPM
GTEx:
124.9
nTPM
FANTOM5:
203.2
Scaled Tags Per Million
Macaque:
80.4
nTPM
Mouse:
29.6
nTPM
Rat:
58.0
nTPM
Pig:
81.8
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
7847
Sample
Intensity
Spinal cord_01
16649
Spinal cord_02
6142
Spinal cord_03
8060
Spinal cord_04
10359
Spinal cord_05
8426
Spinal cord_06
6717
Spinal cord_07
6057
Spinal cord_08
7634
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
148.8
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 135.0
2193
Male, age 75, both hemispheres
153.0
2734
Male, age 80, both hemispheres
139.0
2818
Female, age 79, both hemispheres
127.4
2819
Male, age 47, both hemispheres
120.5
Cervical spinal cord, central gray nTPM: 122.6
1981
Female, age 72, midline
142.1
2048
Male, age 55, midline
141.4
2816
Male, age 47, midline
119.2
2194
Female, age 79, both hemispheres
108.5
2565
Male, age 75, midline
101.6
Cervical spinal cord, dorsal horn nTPM: 129.4
2173
Female, age 72, unknown
166.0
2296
Male, age 66, both hemispheres
155.4
2069
Male, age 47, both hemispheres
146.0
1877
Male, age 55, unknown
109.6
2721
Male, age 90, both hemispheres
101.9
2297
Male, age 75, both hemispheres
97.8
Cervical spinal cord, ventral horn nTPM: 129.1
2098
Female, age 72, unknown
161.2
2809
Male, age 90, both hemispheres
134.4
2068
Male, age 55, unknown
132.4
2480
Male, age 75, both hemispheres
127.7
2295
Male, age 66, both hemispheres
120.8
2820
Female, age 79, both hemispheres
98.4
Dorsal funiculus (white matter) nTPM: 143.1
2128
Male, age 75, both hemispheres
155.1
2064
Female, age 79, both hemispheres
143.3
2810
Male, age 90, both hemispheres
141.8
2817
Male, age 47, both hemispheres
140.8
2812
Male, age 66, both hemispheres
134.5
Lateral funiculus (white matter) nTPM: 148.8
2099
Male, age 90, both hemispheres
175.9
2094
Female, age 79, both hemispheres
155.1
2294
Male, age 66, both hemispheres
135.4
2192
Male, age 75, both hemispheres
129.0
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
124.9
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 124.9
Samples: 204
Max nTPM: 232.8
Min nTPM: 71.4
Std nTPM: 24.2
Median nTPM: 121.8
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
232.8
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
209.0
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
194.9
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
194.5
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
192.4
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
178.3
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
173.7
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
171.3
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
168.7
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
160.9
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
160.4
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
160.1
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
159.3
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
159.1
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
159.0
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
157.4
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
156.7
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
156.5
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
156.4
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
156.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
155.7
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
155.5
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
154.6
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
153.8
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
153.4
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
151.7
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
151.3
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
149.4
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
148.7
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
148.3
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
148.0
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
147.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
146.2
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
145.7
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
145.7
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
145.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
145.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
144.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
144.4
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
144.3
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
144.2
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
144.2
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
143.8
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
143.2
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
143.2
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
142.7
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
140.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
140.4
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
140.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
140.1
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
140.1
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
139.5
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
138.0
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
137.7
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
137.0
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
136.9
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
136.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
136.5
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
136.3
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
135.7
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
135.5
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
135.4
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
135.2
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
134.9
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
134.8
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
134.2
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
133.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
133.0
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
132.6
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
132.5
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
132.1
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
131.7
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
130.3
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
129.7
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
129.6
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
129.2
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
129.1
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
128.7
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
128.7
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
128.7
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
128.1
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
127.6
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
127.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
126.8
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
126.7
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
126.3
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
126.1
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
126.1
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
125.9
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
124.3
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
124.2
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
123.4
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
123.2
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
123.1
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
122.9
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
122.6
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
122.6
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
122.4
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
122.2
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
122.0
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
121.9
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
121.8
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
121.7
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
121.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
121.6
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
121.6
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
121.3
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
121.2
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
121.2
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
121.2
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
121.1
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
120.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
120.0
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
119.3
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
119.3
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
119.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
118.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
118.3
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
118.3
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
117.9
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
117.7
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
117.4
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
117.2
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
116.6
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
116.2
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
115.9
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
115.8
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
115.6
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
115.3
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
115.2
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
115.1
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
114.9
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
114.6
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
114.1
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
114.1
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
113.8
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
113.7
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
111.8
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
111.2
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
111.0
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
110.6
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
110.3
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
110.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
110.0
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
110.0
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
109.6
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
109.6
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
109.6
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
108.9
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
108.6
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
108.3
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
108.0
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
107.9
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
107.6
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
107.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
106.9
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
106.8
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
106.8
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
106.8
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
106.5
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
106.4
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
105.7
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
105.4
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
105.4
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
105.0
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
104.3
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
104.0
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
103.9
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
103.9
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
103.9
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
103.6
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
103.5
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
103.5
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
103.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
103.1
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
102.9
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
102.7
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
102.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
102.0
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
101.6
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
101.5
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
101.1
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
99.9
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
99.6
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
98.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
97.8
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
97.7
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
96.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
96.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
94.2
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
93.9
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
93.8
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
91.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
91.5
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
89.2
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
88.7
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
86.9
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
85.5
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
84.2
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
81.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
80.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
73.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
73.6
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
71.4
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
80.4
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 57.1
Samples: 2
Max nTPM: 57.5
Min nTPM: 56.7
Sample A
56.7
Sample B
57.5
Ventral spinal cord nTPM: 80.4
Samples: 1
Max nTPM: 80.4
Min nTPM: 80.4
Sample A
80.4
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
81.8
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 81.9
Samples: 4
Max nTPM: 125.5
Min nTPM: 60.0
Sample A
Female
65.9
Sample B
Female
76.0
Sample C
Male
125.5
Sample D
Male
60.0
Ventral spinal cord nTPM: 71.7
Samples: 4
Max nTPM: 90.6
Min nTPM: 50.4
Sample A
Female
76.5
Sample B
Female
69.3
Sample C
Male
90.6
Sample D
Male
50.4
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
29.6
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 29.6
Samples: 4
Max nTPM: 33.1
Min nTPM: 28.1
Sample A
33.1
Sample B
29.0
Sample C
28.2
Sample D
28.1
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
58.0
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 58.0
Samples: 4
Max nTPM: 61.0
Min nTPM: 53.3
Sample A
60.8
Sample A
61.0
Sample A
53.3
Sample A
56.9
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The Human Protein Atlas project is funded
