HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Not detected
RNA expressioni
Consensus:373.1 nTPM
HPA Brain:422.4 nTPM
GTEx:373.1 nTPM
FANTOM5:483.3 Scaled Tags Per Million
Pig:185.2 nTPM
Mouse:385.6 nTPM
Allen mouse:8.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038149Antibody HPA038150
Glial cells HighHigh
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 422.4
Sample id Sample description nTPM
Hippocampus
nTPM: 415.5
2529 Female, age 94, left hemisphere 461.1
1911 Female, age 85, right hemisphere 440.5
2621 Female, age 67, right hemisphere 420.7
1855 Male, age 76, left hemisphere 403.5
1898 Male, age 80, left hemisphere 402.6
2148 Female, age 91, left hemisphere 364.4
Dentate gyrus
nTPM: 422.4
2530 Female, age 94, left hemisphere 725.3
2010 Male, age 76, both hemispheres 439.2
2531 Female, age 67, both hemispheres 404.6
1927 Female, age 91, both hemispheres 338.8
2246 Female, age 85, both hemispheres 332.1
2528 Male, age 74, both hemispheres 294.4
Entorhinal gyrus
nTPM: 398.3
2686 Male, age 75, right hemisphere 583.4
2117 Female, age 91, right hemisphere 422.6
2764 Male, age 80, right hemisphere 361.2
1938 Female, age 85, left hemisphere 354.2
1787 Male, age 76, left hemisphere 334.3
2613 Female, age 94, left hemisphere 334.1
Hippocampus, CA1
nTPM: 389.6
2749 Male, age 80, left hemisphere 513.0
2045 Male, age 76, both hemispheres 413.1
1873 Female, age 85, both hemispheres 355.8
2082 Female, age 91, right hemisphere 351.1
2527 Male, age 74, both hemispheres 315.2
Hippocampus, CA2
nTPM: 370.7
2437 Female, age 94, left hemisphere 421.1
1963 Male, age 80, left hemisphere 418.6
1940 Female, age 85, left hemisphere 375.5
2113 Female, age 91, right hemisphere 346.5
1892 Male, age 76, both hemispheres 336.3
2249 Male, age 74, both hemispheres 325.9
Hippocampus, CA3
nTPM: 380.8
2137 Male, age 80, left hemisphere 551.3
2861 Female, age 67, both hemispheres 393.2
1867 Male, age 76, both hemispheres 392.3
1891 Female, age 85, both hemispheres 380.1
2620 Female, age 94, left hemisphere 340.4
2436 Male, age 74, both hemispheres 227.7
Parahippocampal cortex
nTPM: 345.3
2245 Female, age 91, both hemispheres 415.3
2692 Male, age 74, both hemispheres 411.5
2532 Female, age 72, left hemisphere 386.8
2622 Female, age 67, right hemisphere 382.1
2018 Male, age 76, both hemispheres 367.4
1850 Male, age 80, both hemispheres 341.4
1933 Female, age 85, both hemispheres 341.0
1990 Female, age 91, right hemisphere 307.9
2250 Female, age 67, right hemisphere 250.8
2693 Female, age 94, both hemispheres 248.7
Perirhinal gyrus
nTPM: 298.7
2848 Male, age 76, right hemisphere 328.7
1841 Female, age 85, right hemisphere 324.7
1794 Male, age 80, right hemisphere 313.8
1847 Female, age 91, left hemisphere 299.6
2521 Female, age 94, right hemisphere 226.6
Subiculum
nTPM: 420.5
2042 Male, age 76, both hemispheres 532.0
1901 Male, age 80, both hemispheres 495.9
2438 Female, age 94, left hemisphere 472.2
1977 Female, age 85, both hemispheres 366.5
2619 Male, age 74, both hemispheres 330.3
2729 Female, age 91, right hemisphere 326.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 373.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 373.1
Samples: 255

Max nTPM: 1273.6
Min nTPM: 160.6
Std nTPM: 168.9
Median nTPM: 330.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 1273.6
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 1252.7
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 1231.5
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 1096.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 998.1
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 874.7
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 807.3
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 779.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 743.6
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 734.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 712.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 483.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 483.3
FF:10169-103B7 60 years, female 488.1
FF:10153-102I9 76 years, female 478.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 185.2
Pig sample Sample description nTPM
Subiculum
nTPM: 84.6
Samples: 4

Max nTPM: 102.2
Min nTPM: 71.0
Sample A Female 102.2
Sample B Female 74.4
Sample C Male 90.8
Sample D Male 71.0
Dorsal hippocampus
nTPM: 185.2
Samples: 4

Max nTPM: 254.0
Min nTPM: 127.8
Sample A Female 254.0
Sample B Female 199.3
Sample C Male 159.7
Sample D Male 127.8
Entorhinal cortex
nTPM: 82.7
Samples: 4

Max nTPM: 93.5
Min nTPM: 71.4
Sample A Female 87.9
Sample B Female 93.5
Sample C Male 77.9
Sample D Male 71.4
Ventral hippocampus
nTPM: 163.2
Samples: 4

Max nTPM: 285.0
Min nTPM: 94.3
Sample A Female 124.2
Sample B Female 94.3
Sample C Male 149.3
Sample D Male 285.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 385.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 300.6
Samples: 4

Max nTPM: 322.1
Min nTPM: 277.3
Sample A Male 322.1
Sample B Male 291.6
Sample C Female 311.5
Sample D Female 277.3
Hippocampal formation
nTPM: 385.7
Samples: 4

Max nTPM: 421.5
Min nTPM: 349.0
Sample A Male 381.2
Sample B Male 391.0
Sample C Female 421.5
Sample D Female 349.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 8.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.3
68845598 Antisense, RP_050224_02_B05, Mouse strain C57BL/6J (56 days, male) 8.8
71587919 Antisense, RP_050725_03_G05, Mouse strain C57BL/6J (56 days, male) 7.8

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