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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:890.0 nTPM
HPA Brain:812.6 nTPM
GTEx:890.0 nTPM
FANTOM5:796.8 Scaled Tags Per Million
Pig:256.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

812.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 652.1
2565 Male, age 75, midline 891.5
2816 Male, age 47, midline 663.5
2194 Female, age 79, both hemispheres 615.7
2048 Male, age 55, midline 574.9
1981 Female, age 72, midline 514.7
Cervical spinal cord, dorsal horn
nTPM: 486.6
2296 Male, age 66, both hemispheres 657.7
2173 Female, age 72, unknown 578.6
1877 Male, age 55, unknown 455.0
2069 Male, age 47, both hemispheres 452.9
2297 Male, age 75, both hemispheres 414.2
2721 Male, age 90, both hemispheres 361.2
Cervical spinal cord, ventral horn
nTPM: 812.6
2480 Male, age 75, both hemispheres 1307.7
2809 Male, age 90, both hemispheres 1022.0
2295 Male, age 66, both hemispheres 747.1
2820 Female, age 79, both hemispheres 699.5
2098 Female, age 72, unknown 567.1
2068 Male, age 55, unknown 532.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

890.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 890.0
Samples: 204

Max nTPM: 3083.7
Min nTPM: 230.3
Std nTPM: 437.8
Median nTPM: 776.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 3083.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 2521.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2346.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2229.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2126.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1940.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1888.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 1881.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1690.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1660.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1652.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1641.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1631.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1624.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1614.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1603.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1572.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1562.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1552.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1530.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 1501.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1495.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1459.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1431.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1422.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1408.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1377.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1367.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1349.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1297.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1293.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1287.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1277.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1262.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 1260.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1254.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1232.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1230.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1201.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1171.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1171.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1163.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1155.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1152.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1139.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1136.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1108.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1106.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1106.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1106.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1099.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1095.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1081.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1066.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 1061.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1053.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1033.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1016.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1011.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 985.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 985.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 981.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 971.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 968.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 966.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 963.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 962.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 956.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 950.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 948.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 948.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 947.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 926.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 923.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 905.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 900.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 893.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 886.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 882.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 877.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 869.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 868.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 858.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 853.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 846.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 842.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 835.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 833.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 829.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 825.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 824.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 824.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 820.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 818.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 804.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 795.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 789.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 788.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 787.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 782.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 778.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 777.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 775.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 774.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 774.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 772.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 760.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 760.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 760.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 752.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 745.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 742.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 742.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 737.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 737.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 732.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 731.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 729.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 725.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 719.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 716.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 715.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 712.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 709.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 705.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 702.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 701.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 699.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 698.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 698.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 694.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 693.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 686.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 686.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 674.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 671.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 670.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 642.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 641.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 639.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 632.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 629.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 627.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 622.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 622.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 621.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 621.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 612.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 607.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 602.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 599.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 583.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 573.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 569.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 567.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 566.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 563.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 555.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 552.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 550.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 550.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 543.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 542.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 539.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 536.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 536.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 533.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 529.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 527.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 524.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 520.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 515.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 511.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 510.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 507.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 504.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 497.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 496.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 493.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 487.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 485.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 468.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 466.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 461.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 458.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 444.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 442.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 440.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 434.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 419.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 418.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 417.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 405.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 394.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 388.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 375.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 370.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 364.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 322.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 320.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 310.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 308.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 290.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 230.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

796.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 796.8
FF:10159-103A6 76 years, female 912.2
FF:10181-103D1 60 years, female 681.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

256.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 247.5
Samples: 4

Max nTPM: 287.0
Min nTPM: 207.4
Sample A Female 207.4
Sample B Female 260.0
Sample C Male 287.0
Sample D Male 235.7
Ventral spinal cord
nTPM: 256.5
Samples: 4

Max nTPM: 292.7
Min nTPM: 227.2
Sample A Female 256.8
Sample B Female 227.2
Sample C Male 249.3
Sample D Male 292.7

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