On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
557.2
nTPM
HPA Brain:
721.3
nTPM
GTEx:
557.2
nTPM
FANTOM5:
575.4
Scaled Tags Per Million
Macaque:
250.9
nTPM
Mouse:
291.6
nTPM
Pig:
262.7
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
721.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 682.2
2666
Male, age 74, left hemisphere
908.7
2586
Male, age 75, left hemisphere
894.2
2019
Male, age 18, unknown
857.9
2828
Female, age 72, unknown
694.1
1827
Male, age 72, unknown
658.3
1833
Male, age 53, unknown
611.1
1830
Male, age 51, unknown
597.8
2411
Female, age 72, unknown
591.4
1870
Female, age 42, unknown
544.9
2219
Male, age 76, both hemispheres
463.9
Dorsal raphe nucleus nTPM: 526.4
2750
Male, age 76, both hemispheres
624.8
1828
Male, age 53, unknown
547.0
2016
Female, age 72, unknown
521.9
2047
Male, age 72, unknown
491.6
2298
Female, age 72, unknown
446.9
Inferior colliculus nTPM: 467.4
1890
Male, age 53, unknown
520.5
1848
Female, age 42, unknown
475.1
2849
Male, age 72, unknown
467.8
2097
Female, age 72, unknown
406.1
Median raphe nucleus nTPM: 570.6
2220
Male, age 76, midline
570.6
Periaquaductal grey, anterior nTPM: 559.3
2502
Female, age 75, unknown
618.5
1795
Male, age 51, unknown
550.1
1947
Male, age 18, unknown
509.3
Periaquaductal grey, dorsal nTPM: 489.7
2850
Male, age 76, both hemispheres
545.2
1831
Male, age 72, unknown
514.9
2464
Female, age 72, unknown
501.0
1840
Male, age 53, unknown
397.6
Periaquaductal grey, lateral nTPM: 480.1
2140
Male, age 76, both hemispheres
503.5
2053
Male, age 18, unknown
485.6
2272
Male, age 74, both hemispheres
451.3
Pretectal area nTPM: 640.0
2007
Male, age 72, unknown
890.0
1816
Male, age 51, unknown
861.3
1815
Male, age 53, unknown
858.8
1817
Female, age 42, unknown
785.9
1944
Female, age 72, unknown
777.0
2407
Male, age 75, both hemispheres
576.7
2316
Male, age 76, right hemisphere
499.9
2825
Male, age 18, unknown
477.6
2667
Female, age 75, unknown
469.5
2224
Female, age 72, unknown
428.7
2273
Male, age 74, both hemispheres
414.7
Red nucleus nTPM: 721.3
2588
Male, age 74, left hemisphere
1001.6
2785
Male, age 18, unknown
840.4
2503
Female, age 72, unknown
798.4
2584
Male, age 75, left hemisphere
750.9
1865
Male, age 51, unknown
715.0
1904
Male, age 53, unknown
710.9
2725
Female, age 75, unknown
700.3
1821
Female, age 72, unknown
668.0
2823
Male, age 76, right hemisphere
631.3
1954
Female, age 42, unknown
616.1
2769
Male, age 72, unknown
613.2
2227
Male, age 72, unknown
609.7
Substantia nigra nTPM: 639.3
2665
Male, age 74, both hemispheres
766.4
1889
Female, age 72, unknown
702.6
1916
Female, age 42, unknown
670.5
2583
Male, age 75, right hemisphere
670.4
2590
Female, age 75, unknown
657.3
1851
Male, age 51, unknown
643.2
2241
Male, age 72, unknown
591.2
1941
Male, age 53, unknown
580.6
2699
Male, age 18, unknown
562.2
2409
Female, age 72, unknown
549.0
Superior colliculus nTPM: 629.9
2668
Female, age 75, unknown
726.2
2664
Male, age 75, both hemispheres
692.1
2587
Male, age 74, left hemisphere
684.2
2087
Female, age 72, unknown
672.8
2261
Male, age 18, unknown
648.4
1995
Male, age 72, unknown
639.9
1913
Female, age 42, unknown
621.1
1796
Male, age 53, unknown
597.5
1839
Male, age 51, unknown
551.0
1895
Male, age 76, right hemisphere
465.3
Ventral tegmental area nTPM: 563.8
2410
Female, age 72, unknown
630.3
2223
Female, age 72, unknown
596.1
2218
Male, age 76, both hemispheres
582.4
1915
Female, age 42, unknown
539.6
2021
Male, age 53, unknown
527.5
1942
Male, age 51, unknown
507.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
557.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 557.2
Samples: 183
Max nTPM: 1700.9
Min nTPM: 152.7
Std nTPM: 257.9
Median nTPM: 488.5
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
1700.9
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
1314.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1286.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1194.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1152.9
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
1115.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1109.1
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1103.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1091.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1091.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1071.6
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
1058.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1055.7
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
1032.4
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
1006.8
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
980.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
975.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
958.4
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
931.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
923.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
912.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
906.1
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
892.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
892.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
882.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
865.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
852.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
824.5
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
817.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
805.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
794.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
785.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
783.0
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
772.2
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
762.7
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
753.7
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
738.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
737.9
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
737.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
732.0
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
723.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
711.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
710.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
697.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
681.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
668.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
667.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
664.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
662.3
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
661.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
653.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
638.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
631.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
622.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
621.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
610.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
607.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
607.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
601.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
600.9
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
600.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
597.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
595.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
594.5
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
594.4
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
594.1
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
589.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
587.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
573.2
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
573.0
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
570.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
565.9
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
557.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
557.1
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
554.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
547.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
539.3
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
539.0
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
535.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
530.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
524.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
515.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
513.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
510.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
503.4
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
502.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
499.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
493.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
490.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
489.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
488.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
488.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
481.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
480.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
476.7
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
469.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
466.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
463.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
461.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
460.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
456.6
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
455.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
455.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
452.2
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
446.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
446.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
446.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
443.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
434.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
433.0
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
431.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
425.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
421.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
418.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
417.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
413.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
411.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
406.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
402.8
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
400.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
399.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
399.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
397.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
394.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
392.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
390.0
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
389.1
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
387.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
386.7
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
384.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
383.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
382.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
381.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
380.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
379.9
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
376.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
375.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
374.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
371.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
370.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
369.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
364.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
363.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
362.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
357.4
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
357.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
355.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
354.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
353.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
352.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
352.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
352.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
346.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
345.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
344.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
342.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
338.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
338.5
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
338.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
319.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
316.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
307.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
307.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
306.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
300.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
294.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
293.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
292.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
290.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
288.6
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
288.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
281.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
276.5
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
271.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
255.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
241.4
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
233.6
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
233.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
220.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
204.8
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
191.7
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
169.6
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
152.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
250.9
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 210.6
Samples: 1
Max nTPM: 210.6
Min nTPM: 210.6
Sample A
210.6
Midbrain nTPM: 188.5
Samples: 1
Max nTPM: 188.5
Min nTPM: 188.5
Sample A
188.5
Superior colliculi nTPM: 250.9
Samples: 1
Max nTPM: 250.9
Min nTPM: 250.9
Sample A
250.9
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
262.7
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 162.8
Samples: 3
Max nTPM: 174.1
Min nTPM: 154.7
Sample A
Female
174.1
Sample B
Female
154.7
Sample C
Male
159.6
Midbrain nTPM: 262.7
Samples: 3
Max nTPM: 470.6
Min nTPM: 141.1
Sample B
Female
141.1
Sample C
Male
470.6
Sample D
Male
176.3
Periaqueductal gray nTPM: 134.9
Samples: 3
Max nTPM: 140.9
Min nTPM: 128.7
Sample B
Female
135.0
Sample C
Male
140.9
Sample D
Male
128.7
Superior colliculi nTPM: 255.5
Samples: 4
Max nTPM: 377.7
Min nTPM: 184.5
Sample A
Female
215.8
Sample B
Female
184.5
Sample C
Male
377.7
Sample D
Male
243.9
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
291.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 291.6
Samples: 4
Max nTPM: 294.7
Min nTPM: 288.8
Sample A
288.8
Sample B
289.6
Sample C
293.4
Sample D
294.7
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The Human Protein Atlas project is funded
