On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
343.7
nTPM
HPA Brain:
695.3
nTPM
GTEx:
343.7
nTPM
FANTOM5:
448.3
Scaled Tags Per Million
Macaque:
133.9
nTPM
Mouse:
174.5
nTPM
Pig:
79.7
nTPM
AMYGDALA - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - AMYGDALA, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RXFP1+ ...
c-2
Excitatory (VGLUT1/2)
c-3
Inhibitory (GAD1/2) CXCL14+...
c-4
Excitatory (VGLUT1/2)
c-5
Excitatory (VGLUT1/2)
c-6
Inhibitory (GAD1/2) CXCL14+...
c-7
Excitatory (VGLUT1/2)
c-8
Excitatory (VGLUT1/2)
c-9
Excitatory (VGLUT1)
c-10
Excitatory (VGLUT1)
c-11
Inhibitory (GAD1/2)
c-12
Inhibitory (GAD1/2) SST+ LH...
c-13
Excitatory (VGLUT2)
c-14
Inhibitory (GAD1/2) KIT+ LA...
c-15
Inhibitory (GAD1/2) TAC1+ L...
c-16
Excitatory (VGLUT1/2)
c-17
Inhibitory (GAD1/2) TSHZ1+
c-18
Excitatory (VGLUT1/2)
c-19
Inhibitory (GAD1/2) CXCL14+...
c-20
Excitatory (VGLUT1/2)
c-21
Excitatory (VGLUT1/2)
c-22
Excitatory (VGLUT1)
c-23
Unassigned
c-24
Inhibitory (GAD1/2) PENK+ D...
c-25
Excitatory (VGLUT1/2)
c-26
Inhibitory (GAD1/2) CXCL14+...
c-27
Inhibitory (GAD1/2) LHX6+ E...
c-28
Excitatory (VGLUT1/2) SATB2...
c-29
Inhibitory (GAD1) LHX6+
c-30
Excitatory (VGLUT1/2)
c-31
Excitatory (VGLUT1/2)
c-32
Excitatory (VGLUT1)
c-33
Inhibitory (GAD1/2) TAC1+ P...
c-34
Excitatory (VGLUT1/2)
c-35
Excitatory (VGLUT1/2) ETV1+...
c-36
Inhibitory (GAD1/2) PENK+
c-37
Excitatory (VGLUT1/2)
c-38
Excitatory (VGLUT1) FOXP2+
c-39
Excitatory (VGLUT1/2)
c-40
Excitatory (VGLUT1) SOX5+
c-41
Inhibitory (GAD1/2) NOS1+ M...
c-42
Inhibitory (GAD1/2) NOS1+ S...
c-43
Excitatory (VGLUT1/2) ETV1+
c-44
Excitatory (VGLUT1/2) NOS1+
c-45
Excitatory (VGLUT2)
c-46
Excitatory (VGLUT1)
c-47
Serotonergic Inhibitory (GA...
c-48
Excitatory (VGLUT1) FOXP2+ ...
c-49
Excitatory (VGLUT1)
c-50
Inhibitory (GAD1/2) RORB+ K
c-51
CALB2+
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - AMYGDALA, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Astrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocyte progenitor ...
c-7
Microglia
c-8
Oligodendrocytes
c-9
Astrocytes
c-10
Astrocytes (CD44+)
c-11
Microglia
c-12
Oligodendrocyte progenitor ...
c-13
Astrocytes
c-14
Oligodendrocytes
c-15
Astrocytes
c-16
Oligodendrocytes
c-17
Oligodendrocytes
c-18
Fibroblasts
c-19
Ependymal cells
c-20
Mural cells & vECs
c-21
Macrophages
c-22
Immature oligodendrocytes
c-23
Pericytes
c-24
NK-cells & T-cells
c-25
Oligodendrocyte progenitor ...
c-26
Vascular smooth muscle cell
c-27
Fibroblasts (BNC2+ KCNMA1+ ...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
695.3
Sample id
Sample description
nTPM
Basal amygdala nTPM: 545.4
2827
Female, age 67, right hemisphere
1070.2
1955
Male, age 76, both hemispheres
509.6
2609
Male, age 75, right hemisphere
478.7
2685
Female, age 94, left hemisphere
455.7
2110
Male, age 80, left hemisphere
389.0
2243
Female, age 91, right hemisphere
368.9
Central amygdala nTPM: 635.2
2826
Female, age 94, left hemisphere
1112.1
1905
Male, age 76, both hemispheres
722.8
2515
Male, age 75, right hemisphere
572.7
2239
Male, age 80, left hemisphere
384.7
2701
Female, age 91, right hemisphere
383.8
Corticomedial amygdala nTPM: 421.2
2535
Female, age 67, right hemisphere
585.9
2240
Male, age 76, both hemispheres
476.4
2428
Male, age 75, right hemisphere
407.6
2829
Male, age 80, left hemisphere
391.2
2242
Female, age 91, right hemisphere
388.8
2429
Female, age 94, left hemisphere
277.4
Lateral amygdala nTPM: 695.3
2830
Female, age 67, right hemisphere
1499.0
1883
Male, age 76, both hemispheres
641.5
2516
Male, age 75, right hemisphere
622.2
2534
Female, age 94, left hemisphere
573.6
2256
Male, age 80, left hemisphere
479.1
2255
Female, age 91, right hemisphere
356.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
343.7
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 343.7
Samples: 181
Max nTPM: 911.7
Min nTPM: 137.8
Std nTPM: 145.7
Median nTPM: 296.4
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
911.7
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
870.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
779.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
765.9
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
756.5
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
744.8
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
695.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
654.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
650.1
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
646.8
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
629.0
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
626.3
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
600.2
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
574.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
573.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
567.8
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
567.4
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
557.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
553.9
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
548.9
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
542.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
538.4
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
533.6
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
516.8
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
514.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
497.2
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
496.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
486.6
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
478.4
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
457.2
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
450.4
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
448.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
447.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
446.1
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
443.4
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
443.4
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
442.9
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
442.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
430.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
427.4
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
426.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
426.2
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
423.3
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
420.8
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
419.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
412.6
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
408.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
408.2
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
398.0
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
394.1
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
392.2
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
391.3
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
388.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
384.9
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
383.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
382.8
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
376.9
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
371.8
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
367.6
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
364.1
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
363.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
362.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
361.1
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
354.0
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
352.8
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
351.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
347.4
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
346.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
346.2
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
344.4
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
342.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
341.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
333.0
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
330.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
328.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
326.4
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
325.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
325.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
325.2
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
312.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
312.6
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
310.9
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
310.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
305.5
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
300.8
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
300.2
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
299.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
299.2
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
298.7
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
297.8
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
296.4
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
295.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
293.0
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
290.9
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
290.9
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
283.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
281.3
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
281.2
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
280.6
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
278.1
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
276.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
276.0
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
275.9
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
275.2
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
273.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
271.4
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
270.2
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
269.1
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
268.2
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
268.0
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
267.2
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
266.2
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
262.9
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
262.6
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
262.0
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
261.1
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
260.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
260.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
259.2
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
258.7
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
256.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
256.5
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
255.8
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
251.8
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
251.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
251.1
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
250.0
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
249.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
245.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
245.6
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
245.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
245.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
244.7
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
244.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
243.0
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
242.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
242.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
240.2
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
239.5
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
239.1
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
238.1
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
237.9
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
235.5
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
235.0
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
233.1
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
231.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
231.3
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
231.2
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
228.9
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
227.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
227.4
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
227.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
222.5
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
221.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
221.7
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
220.4
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
215.5
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
215.1
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
213.3
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
212.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
209.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
208.1
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
207.3
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
207.1
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
201.8
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
201.6
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
200.8
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
198.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
195.7
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
194.8
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
191.1
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
190.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
190.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
186.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
183.4
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
176.9
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
176.1
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
172.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
168.7
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
166.8
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
137.8
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
133.9
Macaque sample
Sample description
nTPM
Amygdala nTPM: 133.9
Samples: 2
Max nTPM: 138.7
Min nTPM: 129.0
Sample A
129.0
Sample B
138.7
AMYGDALA - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
79.7
Pig sample
Sample description
nTPM
Amygdala nTPM: 79.7
Samples: 4
Max nTPM: 89.5
Min nTPM: 70.2
Sample A
Female
89.5
Sample B
Female
80.2
Sample C
Male
70.2
Sample D
Male
78.9
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
174.5
Mouse sample
Sample description
nTPM
Amygdala nTPM: 174.5
Samples: 4
Max nTPM: 192.2
Min nTPM: 160.6
Sample A
177.3
Sample B
160.6
Sample C
192.2
Sample D
168.0
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The Human Protein Atlas project is funded
