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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:343.7 nTPM
HPA Brain:691.6 nTPM
GTEx:343.7 nTPM
FANTOM5:448.3 Scaled Tags Per Million
Pig:79.5 nTPM
Mouse:257.9 nTPM
Allen mouse:3.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

691.6
Sample id Sample description nTPM
Amygdala
nTPM: 578.5
2695 Female, age 67, right hemisphere 831.9
2814 Male, age 76, right hemisphere 814.1
1987 Female, age 91, left hemisphere 419.7
2514 Male, age 75, right hemisphere 415.7
2517 Female, age 94, left hemisphere 411.3
Basal amygdala
nTPM: 542.4
2827 Female, age 67, right hemisphere 1058.0
1955 Male, age 76, both hemispheres 505.8
2609 Male, age 75, right hemisphere 479.3
2685 Female, age 94, left hemisphere 455.1
2110 Male, age 80, left hemisphere 387.5
2243 Female, age 91, right hemisphere 368.5
Central amygdala
nTPM: 633.6
2826 Female, age 94, left hemisphere 1110.7
1905 Male, age 76, both hemispheres 717.3
2515 Male, age 75, right hemisphere 573.6
2239 Male, age 80, left hemisphere 383.4
2701 Female, age 91, right hemisphere 383.1
Corticomedial amygdala
nTPM: 419.3
2535 Female, age 67, right hemisphere 579.5
2240 Male, age 76, both hemispheres 472.5
2428 Male, age 75, right hemisphere 408.3
2829 Male, age 80, left hemisphere 389.7
2242 Female, age 91, right hemisphere 388.5
2429 Female, age 94, left hemisphere 277.3
Lateral amygdala
nTPM: 691.6
2830 Female, age 67, right hemisphere 1483.1
1883 Male, age 76, both hemispheres 636.5
2516 Male, age 75, right hemisphere 623.1
2534 Female, age 94, left hemisphere 573.1
2256 Male, age 80, left hemisphere 477.4
2255 Female, age 91, right hemisphere 356.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

343.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 343.7
Samples: 181

Max nTPM: 911.7
Min nTPM: 137.8
Std nTPM: 145.7
Median nTPM: 296.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 911.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 870.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 779.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 765.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 756.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 744.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 695.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 654.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 650.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 646.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 629.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 626.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 600.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 574.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 573.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 567.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 567.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 557.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 553.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 548.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 542.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 538.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 533.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 516.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 514.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 497.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 496.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 486.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 478.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 457.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 450.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 448.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 447.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 446.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 443.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 443.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 442.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 442.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 430.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 427.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 426.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 426.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 423.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 420.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 419.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 412.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 408.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 408.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 398.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 394.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 392.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 391.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 388.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 384.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 383.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 382.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 376.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 371.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 367.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 364.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 363.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 362.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 361.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 354.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 352.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 351.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 347.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 346.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 346.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 344.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 342.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 341.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 333.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 330.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 328.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 326.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 325.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 325.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 325.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 312.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 312.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 310.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 310.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 305.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 300.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 300.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 299.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 299.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 298.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 297.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 296.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 295.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 293.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 290.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 290.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 283.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 281.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 281.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 280.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 278.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 276.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 276.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 275.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 275.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 273.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 271.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 270.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 269.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 268.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 268.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 267.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 266.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 262.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 262.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 262.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 261.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 260.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 260.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 259.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 258.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 256.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 256.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 255.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 251.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 251.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 251.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 250.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 249.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 245.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 245.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 245.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 245.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 244.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 244.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 243.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 242.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 242.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 240.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 239.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 239.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 238.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 237.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 235.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 235.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 233.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 231.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 231.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 231.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 228.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 227.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 227.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 227.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 222.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 221.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 221.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 220.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 215.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 215.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 213.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 212.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 209.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 208.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 207.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 207.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 201.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 201.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 200.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 198.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 195.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 194.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 191.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 190.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 190.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 186.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 183.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 176.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 176.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 172.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 168.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 166.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 137.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

448.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 448.3
FF:10151-102I7 76 years, female 448.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.5
Pig sample Sample description nTPM
Amygdala
nTPM: 79.5
Samples: 4

Max nTPM: 89.2
Min nTPM: 70.1
Sample A Female 89.2
Sample B Female 79.9
Sample C Male 70.1
Sample D Male 78.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

257.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 257.9
Samples: 4

Max nTPM: 282.2
Min nTPM: 242.0
Sample A Male 260.6
Sample B Male 246.9
Sample C Female 282.2
Sample D Female 242.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.0
68845598 Antisense, RP_050224_02_B05, Mouse strain C57BL/6J (56 days, male) 3.1
71587919 Antisense, RP_050725_03_G05, Mouse strain C57BL/6J (56 days, male) 2.9

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