MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:113.5 nTPM
HPA Brain:121.7 nTPM
GTEx:113.5 nTPM
FANTOM5:42.7 Scaled Tags Per Million
Mouse:3.2 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 121.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.0
1830 Male, age 51, unknown 103.6
1833 Male, age 53, unknown 100.4
2019 Male, age 18, unknown 94.9
1870 Female, age 42, unknown 86.6
2411 Female, age 72, unknown 86.5
2586 Male, age 75, left hemisphere 80.3
2828 Female, age 72, unknown 80.2
2666 Male, age 74, left hemisphere 78.7
2219 Male, age 76, both hemispheres 76.4
1827 Male, age 72, unknown 62.2
Dorsal raphe nucleus
nTPM: 59.3
2750 Male, age 76, both hemispheres 93.2
2016 Female, age 72, unknown 65.0
1828 Male, age 53, unknown 62.5
2047 Male, age 72, unknown 40.4
2298 Female, age 72, unknown 35.3
Inferior colliculus
nTPM: 52.9
2849 Male, age 72, unknown 63.7
1848 Female, age 42, unknown 54.8
1890 Male, age 53, unknown 53.2
2097 Female, age 72, unknown 39.9
Median raphe nucleus
nTPM: 47.9
2220 Male, age 76, midline 47.9
Periaquaductal grey, anterior
nTPM: 54.0
2502 Female, age 75, unknown 60.4
1947 Male, age 18, unknown 53.6
1795 Male, age 51, unknown 47.8
Periaquaductal grey, dorsal
nTPM: 46.9
2464 Female, age 72, unknown 63.4
1831 Male, age 72, unknown 45.6
2850 Male, age 76, both hemispheres 44.8
1840 Male, age 53, unknown 34.0
Periaquaductal grey, lateral
nTPM: 49.0
2272 Male, age 74, both hemispheres 51.8
2053 Male, age 18, unknown 49.1
2140 Male, age 76, both hemispheres 46.0
Pretectal area
nTPM: 52.2
1815 Male, age 53, unknown 70.2
2316 Male, age 76, right hemisphere 68.0
2667 Female, age 75, unknown 61.3
2825 Male, age 18, unknown 58.3
1817 Female, age 42, unknown 55.0
2407 Male, age 75, both hemispheres 54.7
2007 Male, age 72, unknown 54.5
2224 Female, age 72, unknown 48.0
2273 Male, age 74, both hemispheres 39.0
1944 Female, age 72, unknown 34.0
1816 Male, age 51, unknown 30.9
Red nucleus
nTPM: 121.7
1865 Male, age 51, unknown 145.6
1904 Male, age 53, unknown 142.6
2823 Male, age 76, right hemisphere 141.0
2769 Male, age 72, unknown 138.8
2227 Male, age 72, unknown 135.7
2503 Female, age 72, unknown 132.0
1821 Female, age 72, unknown 123.1
2588 Male, age 74, left hemisphere 117.3
1954 Female, age 42, unknown 108.0
2785 Male, age 18, unknown 106.3
2584 Male, age 75, left hemisphere 88.5
2725 Female, age 75, unknown 82.0
Substantia nigra
nTPM: 67.9
2699 Male, age 18, unknown 89.6
2583 Male, age 75, right hemisphere 83.4
2409 Female, age 72, unknown 82.9
1851 Male, age 51, unknown 77.3
2590 Female, age 75, unknown 68.8
2665 Male, age 74, both hemispheres 62.5
1889 Female, age 72, unknown 61.5
1941 Male, age 53, unknown 53.4
1916 Female, age 42, unknown 52.2
2241 Male, age 72, unknown 47.1
Superior colliculus
nTPM: 63.1
1995 Male, age 72, unknown 93.1
1913 Female, age 42, unknown 84.5
1839 Male, age 51, unknown 69.7
1895 Male, age 76, right hemisphere 69.7
2668 Female, age 75, unknown 63.3
2587 Male, age 74, left hemisphere 62.4
2664 Male, age 75, both hemispheres 55.1
1796 Male, age 53, unknown 54.2
2087 Female, age 72, unknown 40.1
2261 Male, age 18, unknown 39.0
Ventral tegmental area
nTPM: 65.7
2223 Female, age 72, unknown 97.3
2410 Female, age 72, unknown 72.3
2218 Male, age 76, both hemispheres 59.8
1942 Male, age 51, unknown 58.8
2021 Male, age 53, unknown 53.4
1915 Female, age 42, unknown 52.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 113.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 113.5
Samples: 183

Max nTPM: 444.8
Min nTPM: 17.8
Std nTPM: 53.7
Median nTPM: 105.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 444.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 306.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 261.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 253.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 220.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 218.1
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 214.8
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 206.8
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 205.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 205.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 201.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.7
FF:10158-103A5 76 years, female 42.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.2
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.8
Sample A Male 3.9
Sample B Male 2.8
Sample C Female 2.9
Sample D Female 3.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
74750022 Antisense, RP_060220_05_E12, Mouse strain C57BL/6J (56 days, male) 1.1
70528545 Antisense, RP_050623_02_G12, Mouse strain C57BL/6J (56 days, male) 1.0

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