MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.3 nTPM
HPA Brain:102.9 nTPM
GTEx:36.3 nTPM
FANTOM5:61.7 Scaled Tags Per Million
Pig:121.0 nTPM
Mouse:165.5 nTPM
Allen mouse:3.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 102.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.2
1870 Female, age 42, unknown 88.3
2411 Female, age 72, unknown 82.3
2828 Female, age 72, unknown 76.1
1827 Male, age 72, unknown 73.9
1830 Male, age 51, unknown 72.1
1833 Male, age 53, unknown 68.6
2666 Male, age 74, left hemisphere 57.6
2586 Male, age 75, left hemisphere 47.9
2219 Male, age 76, both hemispheres 44.2
2019 Male, age 18, unknown 41.0
Dorsal raphe nucleus
nTPM: 83.2
2298 Female, age 72, unknown 100.1
2750 Male, age 76, both hemispheres 99.5
2047 Male, age 72, unknown 94.0
1828 Male, age 53, unknown 66.3
2016 Female, age 72, unknown 56.0
Inferior colliculus
nTPM: 64.2
1848 Female, age 42, unknown 72.3
2097 Female, age 72, unknown 64.5
2849 Male, age 72, unknown 62.4
1890 Male, age 53, unknown 57.4
Median raphe nucleus
nTPM: 102.9
2220 Male, age 76, midline 102.9
Periaquaductal grey, anterior
nTPM: 92.5
1947 Male, age 18, unknown 107.2
2502 Female, age 75, unknown 92.5
1795 Male, age 51, unknown 77.8
Periaquaductal grey, dorsal
nTPM: 70.3
2850 Male, age 76, both hemispheres 87.2
2464 Female, age 72, unknown 71.3
1831 Male, age 72, unknown 62.3
1840 Male, age 53, unknown 60.2
Periaquaductal grey, lateral
nTPM: 72.9
2053 Male, age 18, unknown 80.5
2140 Male, age 76, both hemispheres 70.9
2272 Male, age 74, both hemispheres 67.4
Pretectal area
nTPM: 68.9
2667 Female, age 75, unknown 87.3
2224 Female, age 72, unknown 83.0
2825 Male, age 18, unknown 82.7
2273 Male, age 74, both hemispheres 71.7
1815 Male, age 53, unknown 71.1
2316 Male, age 76, right hemisphere 65.4
1817 Female, age 42, unknown 62.7
1816 Male, age 51, unknown 62.3
2007 Male, age 72, unknown 60.8
1944 Female, age 72, unknown 57.1
2407 Male, age 75, both hemispheres 53.6
Red nucleus
nTPM: 56.7
1865 Male, age 51, unknown 77.3
2725 Female, age 75, unknown 77.0
1821 Female, age 72, unknown 72.0
1954 Female, age 42, unknown 62.4
1904 Male, age 53, unknown 58.7
2503 Female, age 72, unknown 54.2
2227 Male, age 72, unknown 53.6
2769 Male, age 72, unknown 52.1
2823 Male, age 76, right hemisphere 50.1
2588 Male, age 74, left hemisphere 47.9
2785 Male, age 18, unknown 45.7
2584 Male, age 75, left hemisphere 29.5
Substantia nigra
nTPM: 45.6
1916 Female, age 42, unknown 76.1
1941 Male, age 53, unknown 61.8
1889 Female, age 72, unknown 56.9
2241 Male, age 72, unknown 52.7
2665 Male, age 74, both hemispheres 44.4
2699 Male, age 18, unknown 41.4
1851 Male, age 51, unknown 36.9
2583 Male, age 75, right hemisphere 30.7
2590 Female, age 75, unknown 29.6
2409 Female, age 72, unknown 25.7
Superior colliculus
nTPM: 67.9
2664 Male, age 75, both hemispheres 85.8
2261 Male, age 18, unknown 82.3
1839 Male, age 51, unknown 78.6
2587 Male, age 74, left hemisphere 70.2
1895 Male, age 76, right hemisphere 67.7
2087 Female, age 72, unknown 65.4
1796 Male, age 53, unknown 60.9
1913 Female, age 42, unknown 58.2
1995 Male, age 72, unknown 56.4
2668 Female, age 75, unknown 53.8
Ventral tegmental area
nTPM: 68.1
2223 Female, age 72, unknown 91.6
2218 Male, age 76, both hemispheres 73.4
2021 Male, age 53, unknown 67.2
2410 Female, age 72, unknown 63.7
1915 Female, age 42, unknown 58.6
1942 Male, age 51, unknown 54.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 36.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.3
Samples: 183

Max nTPM: 128.1
Min nTPM: 11.8
Std nTPM: 18.0
Median nTPM: 31.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 128.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 97.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 87.1
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 80.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 80.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 77.8
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 74.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 73.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 72.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 70.3
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 70.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 61.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.7
FF:10158-103A5 76 years, female 61.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 121.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 95.7
Samples: 4

Max nTPM: 135.2
Min nTPM: 77.2
Sample A Female 135.2
Sample B Female 77.2
Sample C Male 89.3
Sample D Male 81.0
Midbrain
nTPM: 121.0
Samples: 4

Max nTPM: 201.3
Min nTPM: 68.3
Sample A Female 201.3
Sample B Female 131.4
Sample C Male 82.8
Sample D Male 68.3
Periaqueductal gray
nTPM: 104.0
Samples: 3

Max nTPM: 113.6
Min nTPM: 92.4
Sample B Female 113.6
Sample C Male 105.9
Sample D Male 92.4
Superior colliculi
nTPM: 80.0
Samples: 4

Max nTPM: 87.7
Min nTPM: 64.5
Sample A Female 83.6
Sample B Female 64.5
Sample C Male 87.7
Sample D Male 84.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 165.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 165.5
Samples: 4

Max nTPM: 171.6
Min nTPM: 157.8
Sample A Male 171.6
Sample B Male 168.4
Sample C Female 157.8
Sample D Female 164.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
70439123 Antisense, RP_050614_03_C01, Mouse strain C57BL/6J (56 days, male) 3.5
74750020 Antisense, RP_060220_05_E10, Mouse strain C57BL/6J (56 days, male) 2.7

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