A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
60.8
nTPM
Monaco:
243.9
nTPM
Schmiedel:
94.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.8
HPA sample
nTPM
Memory B-cell nTPM: 60.8
Samples: 6
Max nTPM: 81.4
Min nTPM: 22.4
P10809_1017
81.4
P10809_1025
73.2
P10809_1044
22.4
P10809_1063
61.6
P10809_1092
65.9
P10809_1105
60.3
Naive B-cell nTPM: 52.0
Samples: 6
Max nTPM: 61.9
Min nTPM: 42.3
P10809_1011
61.9
P10809_1029
48.5
P10809_1048
57.9
P10809_1067
42.3
P10809_1091
50.6
P10809_1104
50.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
243.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 190.2
Samples: 4
Max nTPM: 224.6
Min nTPM: 157.9
RHH5310_R3677
203.2
RHH5218_R3590
157.9
RHH5247_R3619
224.6
RHH5276_R3648
175.0
Naive B-cell nTPM: 182.9
Samples: 4
Max nTPM: 251.9
Min nTPM: 111.9
RHH5308_R3675
111.9
RHH5216_R3588
251.9
RHH5245_R3617
208.1
RHH5274_R3646
159.8
Non-switched memory B-cell nTPM: 195.0
Samples: 4
Max nTPM: 222.8
Min nTPM: 177.7
RHH5309_R3676
222.8
RHH5217_R3589
196.0
RHH5246_R3618
183.3
RHH5275_R3647
177.7
Plasmablast nTPM: 243.9
Samples: 4
Max nTPM: 260.0
Min nTPM: 223.7
RHH5312_R3679
223.7
RHH5220_R3592
257.1
RHH5249_R3621
234.7
RHH5278_R3650
260.0
Switched memory B-cell nTPM: 195.9
Samples: 4
Max nTPM: 233.6
Min nTPM: 160.7
RHH5311_R3678
203.2
RHH5219_R3591
160.7
RHH5248_R3620
233.6
RHH5277_R3649
186.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
94.3
Schmiedel sample id
TPM
Naive B-cell TPM: 94.3
Samples: 91
Max TPM: 114.0
Min TPM: 72.1
B_CELL_NAIVE_1
114.0
B_CELL_NAIVE_2
108.7
B_CELL_NAIVE_3
106.7
B_CELL_NAIVE_4
106.5
B_CELL_NAIVE_5
105.8
B_CELL_NAIVE_6
105.5
B_CELL_NAIVE_7
104.4
B_CELL_NAIVE_8
104.3
B_CELL_NAIVE_9
103.4
B_CELL_NAIVE_10
102.9
B_CELL_NAIVE_11
102.9
B_CELL_NAIVE_12
102.5
B_CELL_NAIVE_13
102.2
B_CELL_NAIVE_14
102.2
B_CELL_NAIVE_15
102.0
B_CELL_NAIVE_16
101.6
B_CELL_NAIVE_17
101.5
B_CELL_NAIVE_18
101.1
B_CELL_NAIVE_19
100.5
B_CELL_NAIVE_20
100.4
B_CELL_NAIVE_21
100.1
B_CELL_NAIVE_22
99.9
B_CELL_NAIVE_23
99.6
B_CELL_NAIVE_24
99.4
B_CELL_NAIVE_25
99.1
B_CELL_NAIVE_26
99.1
B_CELL_NAIVE_27
98.7
B_CELL_NAIVE_28
98.7
B_CELL_NAIVE_29
98.6
B_CELL_NAIVE_30
98.5
B_CELL_NAIVE_31
98.3
B_CELL_NAIVE_32
97.7
B_CELL_NAIVE_33
97.6
B_CELL_NAIVE_34
97.6
B_CELL_NAIVE_35
97.4
B_CELL_NAIVE_36
97.2
B_CELL_NAIVE_37
97.2
B_CELL_NAIVE_38
96.9
B_CELL_NAIVE_39
96.4
B_CELL_NAIVE_40
95.7
B_CELL_NAIVE_41
95.6
B_CELL_NAIVE_42
95.5
B_CELL_NAIVE_43
95.0
B_CELL_NAIVE_44
95.0
B_CELL_NAIVE_45
94.8
B_CELL_NAIVE_46
94.5
B_CELL_NAIVE_47
94.2
B_CELL_NAIVE_48
93.6
B_CELL_NAIVE_49
93.4
B_CELL_NAIVE_50
93.4
B_CELL_NAIVE_51
93.4
B_CELL_NAIVE_52
93.3
B_CELL_NAIVE_53
93.0
B_CELL_NAIVE_54
92.8
B_CELL_NAIVE_55
92.3
B_CELL_NAIVE_56
92.0
B_CELL_NAIVE_57
91.7
B_CELL_NAIVE_58
91.7
B_CELL_NAIVE_59
91.6
B_CELL_NAIVE_60
91.1
B_CELL_NAIVE_61
90.8
B_CELL_NAIVE_62
90.6
B_CELL_NAIVE_63
90.6
B_CELL_NAIVE_64
90.3
B_CELL_NAIVE_65
90.1
B_CELL_NAIVE_66
89.7
B_CELL_NAIVE_67
89.7
B_CELL_NAIVE_68
89.2
B_CELL_NAIVE_69
89.2
B_CELL_NAIVE_70
88.4
B_CELL_NAIVE_71
88.3
B_CELL_NAIVE_72
87.6
B_CELL_NAIVE_73
87.5
B_CELL_NAIVE_74
87.2
B_CELL_NAIVE_75
87.0
B_CELL_NAIVE_76
86.8
B_CELL_NAIVE_77
86.8
B_CELL_NAIVE_78
86.7
B_CELL_NAIVE_79
86.6
B_CELL_NAIVE_80
86.2
B_CELL_NAIVE_81
86.2
B_CELL_NAIVE_82
85.7
B_CELL_NAIVE_83
84.4
B_CELL_NAIVE_84
83.7
B_CELL_NAIVE_85
83.7
B_CELL_NAIVE_86
82.5
B_CELL_NAIVE_87
82.1
B_CELL_NAIVE_88
81.1
B_CELL_NAIVE_89
80.6
B_CELL_NAIVE_90
80.4
B_CELL_NAIVE_91
72.1
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The Human Protein Atlas project is funded
