A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
94.7
nTPM
Monaco:
283.8
nTPM
Schmiedel:
129.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
94.7
HPA sample
nTPM
Classical monocyte nTPM: 73.5
Samples: 6
Max nTPM: 97.6
Min nTPM: 59.2
P10809_1003
97.6
P10809_1020
76.9
P10809_1039
68.4
P10809_1058
68.2
P10809_1080
59.2
P10809_1107
70.9
Intermediate monocyte nTPM: 93.3
Samples: 6
Max nTPM: 117.3
Min nTPM: 69.4
P10809_1004
107.0
P10809_1023
90.8
P10809_1042
117.3
P10809_1061
101.5
P10809_1081
73.6
P10809_1108
69.4
Non-classical monocyte nTPM: 94.7
Samples: 5
Max nTPM: 145.3
Min nTPM: 62.3
P10809_1005
103.9
P10809_1053
83.9
P10809_1072
145.3
P10809_1082
62.3
P10809_1109
78.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
283.8
Monaco sample
nTPM
Classical monocyte nTPM: 269.6
Samples: 4
Max nTPM: 310.2
Min nTPM: 211.4
RHH5313_R3680
211.4
RHH5221_R3593
310.2
RHH5250_R3622
305.5
RHH5279_R3651
251.4
Intermediate monocyte nTPM: 283.8
Samples: 4
Max nTPM: 387.3
Min nTPM: 217.0
RHH5314_R3681
254.3
RHH5222_R3594
387.3
RHH5251_R3623
217.0
RHH5280_R3652
276.6
Non-classical monocyte nTPM: 280.6
Samples: 4
Max nTPM: 329.2
Min nTPM: 233.5
RHH5315_R3682
233.5
RHH5223_R3595
329.2
RHH5252_R3624
285.7
RHH5281_R3653
273.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
129.6
Schmiedel sample id
TPM
Classical monocyte TPM: 111.2
Samples: 91
Max TPM: 135.1
Min TPM: 85.2
MONOCYTES_1
135.1
MONOCYTES_2
134.6
MONOCYTES_3
133.8
MONOCYTES_4
133.4
MONOCYTES_5
132.7
MONOCYTES_6
132.3
MONOCYTES_7
132.2
MONOCYTES_8
129.4
MONOCYTES_9
129.4
MONOCYTES_10
127.7
MONOCYTES_11
127.4
MONOCYTES_12
125.7
MONOCYTES_13
125.3
MONOCYTES_14
124.7
MONOCYTES_15
124.7
MONOCYTES_16
123.5
MONOCYTES_17
123.4
MONOCYTES_18
122.2
MONOCYTES_19
121.6
MONOCYTES_20
121.0
MONOCYTES_21
120.3
MONOCYTES_22
120.2
MONOCYTES_23
120.0
MONOCYTES_24
119.1
MONOCYTES_25
118.5
MONOCYTES_26
118.0
MONOCYTES_27
116.9
MONOCYTES_28
115.5
MONOCYTES_29
114.7
MONOCYTES_30
114.4
MONOCYTES_31
113.7
MONOCYTES_32
113.3
MONOCYTES_33
113.1
MONOCYTES_34
113.1
MONOCYTES_35
112.9
MONOCYTES_36
112.2
MONOCYTES_37
111.9
MONOCYTES_38
111.4
MONOCYTES_39
111.4
MONOCYTES_40
110.8
MONOCYTES_41
110.8
MONOCYTES_42
110.6
MONOCYTES_43
110.6
MONOCYTES_44
110.3
MONOCYTES_45
110.3
MONOCYTES_46
109.7
MONOCYTES_47
109.5
MONOCYTES_48
109.4
MONOCYTES_49
108.8
MONOCYTES_50
108.4
MONOCYTES_51
108.4
MONOCYTES_52
108.3
MONOCYTES_53
108.3
MONOCYTES_54
107.8
MONOCYTES_55
107.6
MONOCYTES_56
107.6
MONOCYTES_57
107.6
MONOCYTES_58
107.5
MONOCYTES_59
107.5
MONOCYTES_60
107.2
MONOCYTES_61
107.0
MONOCYTES_62
106.0
MONOCYTES_63
105.8
MONOCYTES_64
105.5
MONOCYTES_65
105.4
MONOCYTES_66
104.7
MONOCYTES_67
104.6
MONOCYTES_68
104.3
MONOCYTES_69
103.1
MONOCYTES_70
102.3
MONOCYTES_71
101.9
MONOCYTES_72
101.7
MONOCYTES_73
101.6
MONOCYTES_74
101.0
MONOCYTES_75
100.6
MONOCYTES_76
100.5
MONOCYTES_77
99.4
MONOCYTES_78
99.1
MONOCYTES_79
98.8
MONOCYTES_80
98.2
MONOCYTES_81
97.9
MONOCYTES_82
97.8
MONOCYTES_83
97.5
MONOCYTES_84
97.3
MONOCYTES_85
96.6
MONOCYTES_86
94.7
MONOCYTES_87
93.9
MONOCYTES_88
92.0
MONOCYTES_89
90.2
MONOCYTES_90
90.1
MONOCYTES_91
85.2
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Non-classical monocyte TPM: 129.6
Samples: 90
Max TPM: 157.3
Min TPM: 101.6
M2_1
157.3
M2_2
154.4
M2_3
152.2
M2_4
149.6
M2_5
148.9
M2_6
148.2
M2_7
148.0
M2_8
147.6
M2_9
147.3
M2_10
145.6
M2_11
144.2
M2_12
143.9
M2_13
142.9
M2_14
142.5
M2_15
141.7
M2_16
141.5
M2_17
140.3
M2_18
140.1
M2_19
139.8
M2_20
138.9
M2_21
138.3
M2_22
137.9
M2_23
137.0
M2_24
136.9
M2_25
136.4
M2_26
136.0
M2_27
136.0
M2_28
135.9
M2_29
135.8
M2_30
135.6
M2_31
134.6
M2_32
134.3
M2_33
134.1
M2_34
134.1
M2_35
133.5
M2_36
132.8
M2_37
132.7
M2_38
132.3
M2_39
131.9
M2_40
129.8
M2_41
129.7
M2_42
129.0
M2_43
128.6
M2_44
128.4
M2_45
128.2
M2_46
128.1
M2_47
128.0
M2_48
128.0
M2_49
128.0
M2_50
128.0
M2_51
127.6
M2_52
127.5
M2_53
127.1
M2_54
126.3
M2_55
125.9
M2_56
125.8
M2_57
125.5
M2_58
125.2
M2_59
125.2
M2_60
125.0
M2_61
125.0
M2_62
124.7
M2_63
124.0
M2_64
123.5
M2_65
123.3
M2_66
123.3
M2_67
122.4
M2_68
122.3
M2_69
120.7
M2_70
119.0
M2_71
118.7
M2_72
118.7
M2_73
118.5
M2_74
117.9
M2_75
117.8
M2_76
117.6
M2_77
117.6
M2_78
117.2
M2_79
115.7
M2_80
114.9
M2_81
113.9
M2_82
113.7
M2_83
113.3
M2_84
113.1
M2_85
112.4
M2_86
111.7
M2_87
110.3
M2_88
109.8
M2_89
105.1
M2_90
101.6
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