A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
51.8
nTPM
Monaco:
170.0
nTPM
Schmiedel:
97.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.8
HPA sample
nTPM
NK-cell nTPM: 51.8
Samples: 6
Max nTPM: 65.5
Min nTPM: 31.3
P10809_1013
65.1
P10809_1033
36.8
P10809_1052
51.4
P10809_1071
60.8
P10809_1093
65.5
P10809_1103
31.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
170.0
Monaco sample
nTPM
NK-cell nTPM: 170.0
Samples: 4
Max nTPM: 207.8
Min nTPM: 152.8
RHH5316_R3683
152.8
RHH5224_R3596
207.8
RHH5253_R3625
157.6
RHH5282_R3654
161.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
97.7
Schmiedel sample id
TPM
NK-cell TPM: 97.7
Samples: 90
Max TPM: 125.0
Min TPM: 78.6
NK_1
125.0
NK_2
121.0
NK_3
118.6
NK_4
113.8
NK_5
112.3
NK_6
110.9
NK_7
110.8
NK_8
110.5
NK_9
109.9
NK_10
109.4
NK_11
109.0
NK_12
108.9
NK_13
108.6
NK_14
108.5
NK_15
108.2
NK_16
107.7
NK_17
107.2
NK_18
107.2
NK_19
106.9
NK_20
105.4
NK_21
104.4
NK_22
104.3
NK_23
103.5
NK_24
103.1
NK_25
102.7
NK_26
102.1
NK_27
102.1
NK_28
101.8
NK_29
101.6
NK_30
101.6
NK_31
101.5
NK_32
101.5
NK_33
101.4
NK_34
101.2
NK_35
101.2
NK_36
100.7
NK_37
100.2
NK_38
99.5
NK_39
99.5
NK_40
99.1
NK_41
98.8
NK_42
98.7
NK_43
98.5
NK_44
98.0
NK_45
97.4
NK_46
96.9
NK_47
96.6
NK_48
96.4
NK_49
96.0
NK_50
95.3
NK_51
95.1
NK_52
94.7
NK_53
94.6
NK_54
94.6
NK_55
94.2
NK_56
94.1
NK_57
93.8
NK_58
93.5
NK_59
92.8
NK_60
92.5
NK_61
91.8
NK_62
91.7
NK_63
91.6
NK_64
91.5
NK_65
91.2
NK_66
91.1
NK_67
90.8
NK_68
90.5
NK_69
90.1
NK_70
90.1
NK_71
89.8
NK_72
89.7
NK_73
89.4
NK_74
89.0
NK_75
89.0
NK_76
88.9
NK_77
87.6
NK_78
87.4
NK_79
87.4
NK_80
87.3
NK_81
86.6
NK_82
84.5
NK_83
84.2
NK_84
84.1
NK_85
84.0
NK_86
83.5
NK_87
83.0
NK_88
82.0
NK_89
79.4
NK_90
78.6
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