A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
33.0
nTPM
Monaco:
93.2
nTPM
Schmiedel:
71.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.0
HPA sample
nTPM
Memory B-cell nTPM: 33.0
Samples: 6
Max nTPM: 43.4
Min nTPM: 27.8
P10809_1017
33.4
P10809_1025
43.4
P10809_1044
27.8
P10809_1063
31.3
P10809_1092
30.0
P10809_1105
32.3
Naive B-cell nTPM: 19.2
Samples: 6
Max nTPM: 28.9
Min nTPM: 13.5
P10809_1011
13.5
P10809_1029
18.3
P10809_1048
28.9
P10809_1067
15.6
P10809_1091
19.2
P10809_1104
19.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
93.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 82.2
Samples: 4
Max nTPM: 99.1
Min nTPM: 55.6
RHH5310_R3677
92.9
RHH5218_R3590
55.6
RHH5247_R3619
99.1
RHH5276_R3648
81.2
Naive B-cell nTPM: 47.2
Samples: 4
Max nTPM: 59.1
Min nTPM: 35.8
RHH5308_R3675
39.4
RHH5216_R3588
54.3
RHH5245_R3617
35.8
RHH5274_R3646
59.1
Non-switched memory B-cell nTPM: 87.6
Samples: 4
Max nTPM: 111.2
Min nTPM: 62.2
RHH5309_R3676
69.3
RHH5217_R3589
62.2
RHH5246_R3618
107.7
RHH5275_R3647
111.2
Plasmablast nTPM: 56.9
Samples: 4
Max nTPM: 72.3
Min nTPM: 46.7
RHH5312_R3679
72.3
RHH5220_R3592
52.2
RHH5249_R3621
46.7
RHH5278_R3650
56.6
Switched memory B-cell nTPM: 93.2
Samples: 4
Max nTPM: 104.8
Min nTPM: 78.8
RHH5311_R3678
93.1
RHH5219_R3591
78.8
RHH5248_R3620
104.8
RHH5277_R3649
96.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.8
Schmiedel sample id
TPM
Naive B-cell TPM: 71.8
Samples: 91
Max TPM: 96.6
Min TPM: 50.6
B_CELL_NAIVE_1
96.6
B_CELL_NAIVE_2
95.6
B_CELL_NAIVE_3
93.8
B_CELL_NAIVE_4
92.2
B_CELL_NAIVE_5
91.8
B_CELL_NAIVE_6
90.5
B_CELL_NAIVE_7
89.9
B_CELL_NAIVE_8
88.8
B_CELL_NAIVE_9
88.5
B_CELL_NAIVE_10
87.0
B_CELL_NAIVE_11
85.9
B_CELL_NAIVE_12
85.3
B_CELL_NAIVE_13
85.0
B_CELL_NAIVE_14
83.4
B_CELL_NAIVE_15
83.3
B_CELL_NAIVE_16
82.7
B_CELL_NAIVE_17
82.3
B_CELL_NAIVE_18
82.0
B_CELL_NAIVE_19
81.1
B_CELL_NAIVE_20
80.2
B_CELL_NAIVE_21
80.0
B_CELL_NAIVE_22
79.4
B_CELL_NAIVE_23
78.8
B_CELL_NAIVE_24
78.5
B_CELL_NAIVE_25
77.8
B_CELL_NAIVE_26
77.7
B_CELL_NAIVE_27
77.5
B_CELL_NAIVE_28
76.6
B_CELL_NAIVE_29
75.8
B_CELL_NAIVE_30
75.7
B_CELL_NAIVE_31
75.5
B_CELL_NAIVE_32
75.1
B_CELL_NAIVE_33
74.9
B_CELL_NAIVE_34
74.6
B_CELL_NAIVE_35
74.5
B_CELL_NAIVE_36
73.9
B_CELL_NAIVE_37
73.8
B_CELL_NAIVE_38
73.4
B_CELL_NAIVE_39
73.2
B_CELL_NAIVE_40
73.0
B_CELL_NAIVE_41
72.9
B_CELL_NAIVE_42
72.5
B_CELL_NAIVE_43
72.4
B_CELL_NAIVE_44
72.1
B_CELL_NAIVE_45
71.9
B_CELL_NAIVE_46
70.9
B_CELL_NAIVE_47
70.0
B_CELL_NAIVE_48
69.7
B_CELL_NAIVE_49
69.6
B_CELL_NAIVE_50
69.3
B_CELL_NAIVE_51
68.8
B_CELL_NAIVE_52
68.4
B_CELL_NAIVE_53
68.1
B_CELL_NAIVE_54
67.3
B_CELL_NAIVE_55
67.2
B_CELL_NAIVE_56
67.1
B_CELL_NAIVE_57
67.0
B_CELL_NAIVE_58
66.6
B_CELL_NAIVE_59
66.4
B_CELL_NAIVE_60
66.4
B_CELL_NAIVE_61
66.1
B_CELL_NAIVE_62
66.1
B_CELL_NAIVE_63
66.0
B_CELL_NAIVE_64
66.0
B_CELL_NAIVE_65
65.4
B_CELL_NAIVE_66
65.3
B_CELL_NAIVE_67
64.4
B_CELL_NAIVE_68
64.3
B_CELL_NAIVE_69
64.1
B_CELL_NAIVE_70
63.6
B_CELL_NAIVE_71
63.4
B_CELL_NAIVE_72
63.2
B_CELL_NAIVE_73
62.9
B_CELL_NAIVE_74
61.7
B_CELL_NAIVE_75
61.3
B_CELL_NAIVE_76
61.0
B_CELL_NAIVE_77
60.8
B_CELL_NAIVE_78
60.6
B_CELL_NAIVE_79
60.4
B_CELL_NAIVE_80
60.3
B_CELL_NAIVE_81
59.7
B_CELL_NAIVE_82
59.1
B_CELL_NAIVE_83
58.1
B_CELL_NAIVE_84
57.9
B_CELL_NAIVE_85
57.6
B_CELL_NAIVE_86
55.4
B_CELL_NAIVE_87
54.5
B_CELL_NAIVE_88
53.9
B_CELL_NAIVE_89
53.5
B_CELL_NAIVE_90
52.3
B_CELL_NAIVE_91
50.6
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The Human Protein Atlas project is funded
