A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
59.8
nTPM
Monaco:
152.5
nTPM
Schmiedel:
281.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.8
HPA sample
nTPM
NK-cell nTPM: 59.8
Samples: 6
Max nTPM: 82.4
Min nTPM: 35.6
P10809_1013
43.7
P10809_1033
35.6
P10809_1052
82.4
P10809_1071
60.6
P10809_1093
66.7
P10809_1103
69.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
152.5
Monaco sample
nTPM
NK-cell nTPM: 152.5
Samples: 4
Max nTPM: 179.6
Min nTPM: 137.0
RHH5316_R3683
137.1
RHH5224_R3596
179.6
RHH5253_R3625
137.0
RHH5282_R3654
156.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
281.1
Schmiedel sample id
TPM
NK-cell TPM: 281.1
Samples: 90
Max TPM: 522.6
Min TPM: 153.6
NK_1
522.6
NK_2
464.2
NK_3
452.0
NK_4
451.3
NK_5
414.3
NK_6
392.3
NK_7
383.1
NK_8
365.3
NK_9
364.9
NK_10
364.4
NK_11
363.9
NK_12
360.4
NK_13
358.6
NK_14
355.0
NK_15
352.3
NK_16
341.2
NK_17
338.8
NK_18
338.4
NK_19
333.4
NK_20
328.8
NK_21
326.1
NK_22
324.7
NK_23
320.3
NK_24
318.8
NK_25
318.5
NK_26
317.2
NK_27
315.8
NK_28
315.5
NK_29
315.4
NK_30
312.6
NK_31
310.6
NK_32
306.2
NK_33
305.0
NK_34
299.4
NK_35
296.5
NK_36
294.2
NK_37
284.5
NK_38
283.8
NK_39
282.8
NK_40
275.1
NK_41
271.2
NK_42
270.9
NK_43
269.9
NK_44
268.0
NK_45
267.2
NK_46
265.2
NK_47
263.3
NK_48
263.3
NK_49
262.5
NK_50
261.0
NK_51
260.4
NK_52
259.2
NK_53
258.3
NK_54
257.6
NK_55
253.9
NK_56
251.2
NK_57
248.1
NK_58
246.8
NK_59
245.1
NK_60
243.7
NK_61
238.8
NK_62
238.2
NK_63
237.4
NK_64
232.6
NK_65
230.5
NK_66
229.6
NK_67
227.1
NK_68
226.2
NK_69
225.1
NK_70
224.9
NK_71
224.3
NK_72
221.9
NK_73
220.2
NK_74
218.6
NK_75
216.7
NK_76
212.5
NK_77
212.3
NK_78
209.4
NK_79
208.1
NK_80
208.0
NK_81
205.1
NK_82
204.7
NK_83
202.7
NK_84
202.1
NK_85
198.8
NK_86
187.4
NK_87
179.2
NK_88
176.1
NK_89
169.6
NK_90
153.6
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