A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
44.2
nTPM
Monaco:
99.2
nTPM
Schmiedel:
107.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.2
HPA sample
nTPM
Classical monocyte nTPM: 34.2
Samples: 6
Max nTPM: 43.2
Min nTPM: 26.6
P10809_1003
33.3
P10809_1020
43.2
P10809_1039
41.1
P10809_1058
26.6
P10809_1080
33.5
P10809_1107
27.4
Intermediate monocyte nTPM: 42.5
Samples: 6
Max nTPM: 69.6
Min nTPM: 30.8
P10809_1004
48.3
P10809_1023
32.4
P10809_1042
43.2
P10809_1061
69.6
P10809_1081
30.8
P10809_1108
30.9
Non-classical monocyte nTPM: 44.2
Samples: 5
Max nTPM: 64.5
Min nTPM: 22.4
P10809_1005
50.3
P10809_1053
51.0
P10809_1072
64.5
P10809_1082
22.4
P10809_1109
32.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
99.2
Monaco sample
nTPM
Classical monocyte nTPM: 85.8
Samples: 4
Max nTPM: 92.7
Min nTPM: 77.4
RHH5313_R3680
77.4
RHH5221_R3593
92.7
RHH5250_R3622
87.5
RHH5279_R3651
85.6
Intermediate monocyte nTPM: 84.0
Samples: 4
Max nTPM: 117.5
Min nTPM: 66.1
RHH5314_R3681
66.1
RHH5222_R3594
117.5
RHH5251_R3623
70.4
RHH5280_R3652
82.1
Non-classical monocyte nTPM: 99.2
Samples: 4
Max nTPM: 108.8
Min nTPM: 89.2
RHH5315_R3682
93.2
RHH5223_R3595
108.8
RHH5252_R3624
89.2
RHH5281_R3653
105.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
107.8
Schmiedel sample id
TPM
Classical monocyte TPM: 81.0
Samples: 91
Max TPM: 119.2
Min TPM: 45.9
MONOCYTES_1
119.2
MONOCYTES_2
117.0
MONOCYTES_3
114.3
MONOCYTES_4
113.0
MONOCYTES_5
112.4
MONOCYTES_6
110.9
MONOCYTES_7
110.8
MONOCYTES_8
108.8
MONOCYTES_9
107.1
MONOCYTES_10
106.1
MONOCYTES_11
105.7
MONOCYTES_12
105.6
MONOCYTES_13
104.2
MONOCYTES_14
103.1
MONOCYTES_15
100.8
MONOCYTES_16
98.4
MONOCYTES_17
97.9
MONOCYTES_18
97.8
MONOCYTES_19
96.8
MONOCYTES_20
95.6
MONOCYTES_21
94.9
MONOCYTES_22
93.2
MONOCYTES_23
92.2
MONOCYTES_24
91.4
MONOCYTES_25
90.9
MONOCYTES_26
90.8
MONOCYTES_27
90.4
MONOCYTES_28
90.0
MONOCYTES_29
89.8
MONOCYTES_30
88.3
MONOCYTES_31
88.2
MONOCYTES_32
87.9
MONOCYTES_33
87.8
MONOCYTES_34
87.8
MONOCYTES_35
85.7
MONOCYTES_36
85.5
MONOCYTES_37
85.5
MONOCYTES_38
84.0
MONOCYTES_39
83.7
MONOCYTES_40
83.7
MONOCYTES_41
83.5
MONOCYTES_42
83.0
MONOCYTES_43
82.1
MONOCYTES_44
81.7
MONOCYTES_45
81.7
MONOCYTES_46
81.6
MONOCYTES_47
81.3
MONOCYTES_48
81.3
MONOCYTES_49
81.0
MONOCYTES_50
80.8
MONOCYTES_51
80.1
MONOCYTES_52
79.2
MONOCYTES_53
78.4
MONOCYTES_54
78.0
MONOCYTES_55
77.3
MONOCYTES_56
76.7
MONOCYTES_57
76.4
MONOCYTES_58
75.3
MONOCYTES_59
75.3
MONOCYTES_60
74.7
MONOCYTES_61
72.4
MONOCYTES_62
72.3
MONOCYTES_63
71.3
MONOCYTES_64
71.1
MONOCYTES_65
70.5
MONOCYTES_66
70.4
MONOCYTES_67
70.3
MONOCYTES_68
67.7
MONOCYTES_69
67.6
MONOCYTES_70
67.2
MONOCYTES_71
64.4
MONOCYTES_72
64.2
MONOCYTES_73
63.9
MONOCYTES_74
63.4
MONOCYTES_75
61.5
MONOCYTES_76
60.9
MONOCYTES_77
58.5
MONOCYTES_78
58.0
MONOCYTES_79
57.2
MONOCYTES_80
57.1
MONOCYTES_81
56.9
MONOCYTES_82
56.7
MONOCYTES_83
56.0
MONOCYTES_84
55.8
MONOCYTES_85
54.1
MONOCYTES_86
53.7
MONOCYTES_87
51.9
MONOCYTES_88
49.6
MONOCYTES_89
47.0
MONOCYTES_90
46.1
MONOCYTES_91
45.9
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Non-classical monocyte TPM: 107.8
Samples: 90
Max TPM: 162.4
Min TPM: 59.1
M2_1
162.4
M2_2
153.1
M2_3
150.1
M2_4
149.6
M2_5
145.7
M2_6
143.2
M2_7
141.3
M2_8
138.6
M2_9
137.2
M2_10
136.2
M2_11
136.2
M2_12
133.8
M2_13
133.6
M2_14
132.5
M2_15
130.8
M2_16
129.1
M2_17
127.9
M2_18
127.7
M2_19
127.5
M2_20
127.0
M2_21
126.6
M2_22
126.1
M2_23
125.8
M2_24
125.6
M2_25
124.5
M2_26
123.4
M2_27
122.8
M2_28
122.7
M2_29
121.8
M2_30
118.9
M2_31
118.7
M2_32
118.4
M2_33
118.3
M2_34
118.2
M2_35
116.2
M2_36
115.7
M2_37
114.4
M2_38
113.9
M2_39
113.4
M2_40
110.4
M2_41
110.1
M2_42
109.7
M2_43
109.7
M2_44
107.6
M2_45
107.3
M2_46
107.0
M2_47
106.3
M2_48
105.1
M2_49
103.7
M2_50
103.2
M2_51
101.2
M2_52
101.1
M2_53
100.7
M2_54
97.1
M2_55
97.0
M2_56
96.3
M2_57
96.1
M2_58
96.1
M2_59
95.7
M2_60
95.0
M2_61
94.5
M2_62
94.3
M2_63
94.1
M2_64
94.1
M2_65
94.0
M2_66
93.9
M2_67
93.6
M2_68
93.4
M2_69
90.6
M2_70
89.9
M2_71
88.6
M2_72
87.5
M2_73
86.9
M2_74
85.5
M2_75
85.2
M2_76
83.6
M2_77
82.7
M2_78
82.1
M2_79
81.3
M2_80
81.0
M2_81
80.5
M2_82
80.0
M2_83
76.7
M2_84
76.4
M2_85
72.1
M2_86
71.6
M2_87
69.8
M2_88
68.4
M2_89
63.3
M2_90
59.1
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