On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
201.8
nTPM
HPA Brain:
835.6
nTPM
GTEx:
201.8
nTPM
FANTOM5:
936.9
Scaled Tags Per Million
Macaque:
484.8
nTPM
Mouse:
387.8
nTPM
Rat:
316.7
nTPM
Pig:
1007.9
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
54613
Sample
Intensity
Spinal cord_01
99980
Spinal cord_02
53360
Spinal cord_03
78852
Spinal cord_04
44745
Spinal cord_05
31955
Spinal cord_06
103351
Spinal cord_07
55867
Spinal cord_08
48482
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
835.6
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 710.9
2734
Male, age 80, both hemispheres
1051.0
2818
Female, age 79, both hemispheres
651.6
2819
Male, age 47, both hemispheres
598.2
2193
Male, age 75, both hemispheres
542.9
Cervical spinal cord, central gray nTPM: 561.0
2565
Male, age 75, midline
677.8
2816
Male, age 47, midline
605.0
2048
Male, age 55, midline
522.9
2194
Female, age 79, both hemispheres
518.1
1981
Female, age 72, midline
481.1
Cervical spinal cord, dorsal horn nTPM: 441.0
2173
Female, age 72, unknown
621.1
2296
Male, age 66, both hemispheres
608.9
1877
Male, age 55, unknown
426.9
2069
Male, age 47, both hemispheres
405.8
2721
Male, age 90, both hemispheres
302.9
2297
Male, age 75, both hemispheres
280.6
Cervical spinal cord, ventral horn nTPM: 835.6
2480
Male, age 75, both hemispheres
1348.7
2809
Male, age 90, both hemispheres
978.8
2295
Male, age 66, both hemispheres
802.2
2820
Female, age 79, both hemispheres
763.6
2068
Male, age 55, unknown
696.4
2098
Female, age 72, unknown
423.9
Dorsal funiculus (white matter) nTPM: 672.6
2810
Male, age 90, both hemispheres
825.9
2817
Male, age 47, both hemispheres
730.6
2064
Female, age 79, both hemispheres
617.6
2128
Male, age 75, both hemispheres
601.6
2812
Male, age 66, both hemispheres
587.4
Lateral funiculus (white matter) nTPM: 537.3
2094
Female, age 79, both hemispheres
722.0
2192
Male, age 75, both hemispheres
548.8
2099
Male, age 90, both hemispheres
473.7
2294
Male, age 66, both hemispheres
404.6
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
201.8
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 201.8
Samples: 204
Max nTPM: 783.9
Min nTPM: 40.8
Std nTPM: 108.0
Median nTPM: 180.2
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
783.9
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
601.8
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
577.2
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
556.2
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
531.8
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
497.3
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
461.9
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
458.5
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
449.0
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
411.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
378.1
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
371.4
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
358.4
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
357.2
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
356.7
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
351.8
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
340.9
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
340.5
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
331.4
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
323.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
317.8
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
317.5
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
315.5
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
314.5
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
311.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
309.4
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
309.2
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
309.1
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
305.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
301.3
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
297.0
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
296.3
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
295.7
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
295.7
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
293.6
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
289.7
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
289.6
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
288.4
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
288.0
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
277.4
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
270.3
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
267.9
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
267.3
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
263.5
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
263.5
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
263.3
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
257.9
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
256.7
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
246.4
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
245.6
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
243.6
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
243.5
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
241.2
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
237.7
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
235.3
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
234.6
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
234.2
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
232.4
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
227.5
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
227.1
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
224.3
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
223.2
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
222.8
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
222.3
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
217.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
217.4
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
217.2
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
216.3
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
215.4
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
215.4
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
211.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
211.1
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
208.7
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
207.6
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
207.4
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
206.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
206.9
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
204.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
204.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
202.5
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
202.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
200.8
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
200.3
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
199.9
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
199.0
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
196.7
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
196.3
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
194.5
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
193.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
192.0
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
189.5
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
188.7
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
187.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
185.9
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
184.0
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
183.5
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
183.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
182.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
182.1
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
181.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
181.8
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
181.5
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
178.8
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
178.4
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
175.7
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
174.9
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
174.6
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
174.5
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
173.3
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
173.3
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
171.4
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
170.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
170.7
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
170.6
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
170.3
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
169.2
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
168.1
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
167.1
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
166.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
166.5
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
163.7
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
163.7
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
163.5
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
162.3
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
158.3
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
158.2
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
158.0
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
157.1
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
157.0
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
156.1
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
154.6
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
153.1
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
153.1
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
151.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
150.9
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
149.6
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
148.3
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
148.0
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
145.0
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
142.2
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
139.9
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
138.3
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
137.4
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
137.1
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
135.9
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
134.9
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
132.4
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
131.9
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
131.5
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
131.5
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
130.6
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
129.5
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
128.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
127.9
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
124.6
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
124.0
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
123.1
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
121.2
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
120.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
120.5
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
120.5
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
120.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
119.9
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
118.1
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
117.0
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
115.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
113.9
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
112.3
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
112.2
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
111.4
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
110.9
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
110.2
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
109.0
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
108.7
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
108.3
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
107.5
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
107.0
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
106.6
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
106.5
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
105.7
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
103.2
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
103.2
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
102.0
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
98.7
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
98.1
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
96.4
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
96.1
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
95.0
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
89.0
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
88.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
87.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
79.6
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
74.0
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
73.3
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
72.7
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
71.5
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
68.5
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
68.3
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
66.8
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
57.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
53.0
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
47.9
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
41.4
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
40.8
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
484.8
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 359.3
Samples: 2
Max nTPM: 410.2
Min nTPM: 308.3
Sample A
308.3
Sample B
410.2
Ventral spinal cord nTPM: 484.8
Samples: 1
Max nTPM: 484.8
Min nTPM: 484.8
Sample A
484.8
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1007.9
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 773.5
Samples: 4
Max nTPM: 808.2
Min nTPM: 728.9
Sample A
Female
754.6
Sample B
Female
802.2
Sample C
Male
728.9
Sample D
Male
808.2
Ventral spinal cord nTPM: 1007.9
Samples: 4
Max nTPM: 1240.0
Min nTPM: 912.0
Sample A
Female
925.5
Sample B
Female
954.1
Sample C
Male
912.0
Sample D
Male
1240.0
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
387.8
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 387.8
Samples: 4
Max nTPM: 408.7
Min nTPM: 375.5
Sample A
375.5
Sample B
408.7
Sample C
377.6
Sample D
389.4
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
316.7
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 316.7
Samples: 4
Max nTPM: 383.9
Min nTPM: 258.9
Sample A
383.9
Sample A
331.5
Sample A
292.5
Sample A
258.9
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The Human Protein Atlas project is funded
