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  • NDUFB4
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:196.0 nTPM
HPA Brain:72.8 nTPM
GTEx:196.0 nTPM
FANTOM5:184.3 Scaled Tags Per Million
Pig:92.4 nTPM
Mouse:51.3 nTPM
Allen mouse:3.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.8
Sample id Sample description nTPM
Amygdala
nTPM: 72.8
2814 Male, age 76, right hemisphere 90.6
2514 Male, age 75, right hemisphere 74.3
1987 Female, age 91, left hemisphere 73.3
2695 Female, age 67, right hemisphere 71.8
2517 Female, age 94, left hemisphere 54.1
Basal amygdala
nTPM: 54.8
2609 Male, age 75, right hemisphere 74.8
1955 Male, age 76, both hemispheres 70.2
2243 Female, age 91, right hemisphere 59.1
2110 Male, age 80, left hemisphere 50.4
2685 Female, age 94, left hemisphere 45.9
2827 Female, age 67, right hemisphere 28.4
Central amygdala
nTPM: 57.2
1905 Male, age 76, both hemispheres 77.1
2515 Male, age 75, right hemisphere 54.3
2701 Female, age 91, right hemisphere 52.9
2826 Female, age 94, left hemisphere 51.2
2239 Male, age 80, left hemisphere 50.7
Corticomedial amygdala
nTPM: 59.2
2428 Male, age 75, right hemisphere 68.0
2829 Male, age 80, left hemisphere 66.8
2242 Female, age 91, right hemisphere 64.7
2240 Male, age 76, both hemispheres 62.3
2429 Female, age 94, left hemisphere 60.3
2535 Female, age 67, right hemisphere 33.4
Lateral amygdala
nTPM: 50.1
1883 Male, age 76, both hemispheres 71.3
2516 Male, age 75, right hemisphere 64.8
2534 Female, age 94, left hemisphere 54.5
2255 Female, age 91, right hemisphere 42.1
2256 Male, age 80, left hemisphere 42.0
2830 Female, age 67, right hemisphere 26.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 196.0
Samples: 181

Max nTPM: 525.2
Min nTPM: 107.2
Std nTPM: 61.7
Median nTPM: 183.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 525.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 486.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 461.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 417.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 340.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 316.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 315.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 309.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 302.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 292.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 291.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 287.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 279.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 278.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 274.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 274.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 273.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 273.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 273.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 271.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 270.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 266.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 264.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 252.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 242.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 239.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 236.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 233.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 232.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 232.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 232.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 232.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 231.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 230.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 230.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 228.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 227.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 224.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 224.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 223.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 223.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 222.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 218.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 217.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 214.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 214.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 212.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 211.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 210.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 210.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 209.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 209.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 209.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 208.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 206.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 206.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 206.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 206.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 205.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 205.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 205.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 205.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 202.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 200.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 198.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 198.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 198.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 197.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 197.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 196.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 196.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 195.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 195.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 194.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 194.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 193.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 193.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 193.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 193.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 192.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 192.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 190.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 188.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 188.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 188.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 188.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 187.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 186.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 185.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 185.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 183.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 183.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 182.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 181.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 181.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 180.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 179.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 177.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 176.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 176.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 175.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 174.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 174.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 174.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 172.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 171.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 171.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 171.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 171.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 171.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 170.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 170.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 169.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 168.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 168.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 168.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 168.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 167.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 166.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 166.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 165.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 164.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 164.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 163.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 163.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 163.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 162.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 162.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 162.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 161.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 161.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 161.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 160.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 160.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 160.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 159.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 159.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 158.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 157.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 156.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 156.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 156.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 156.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 155.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 154.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 153.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 150.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 148.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 148.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 148.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 147.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 147.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 147.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 146.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 146.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 145.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 145.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 145.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 145.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 144.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 141.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 140.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 138.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 137.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 137.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 136.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 135.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 135.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 133.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 130.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 126.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 125.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 125.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 124.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 124.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 121.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 120.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 118.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 117.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 110.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 107.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

184.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 184.3
FF:10151-102I7 76 years, female 184.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.4
Pig sample Sample description nTPM
Amygdala
nTPM: 92.4
Samples: 4

Max nTPM: 125.9
Min nTPM: 79.0
Sample A Female 125.9
Sample B Female 84.6
Sample C Male 79.0
Sample D Male 80.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 51.4
Samples: 4

Max nTPM: 56.0
Min nTPM: 44.6
Sample A Male 44.6
Sample B Male 56.0
Sample C Female 53.9
Sample D Female 50.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.1
68745006 Antisense, RP_050210_01_A12, Mouse strain C57BL/6J (56 days, male) 3.1

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