MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:200.7 nTPM
HPA Brain:77.9 nTPM
GTEx:200.7 nTPM
FANTOM5:201.7 Scaled Tags Per Million
Pig:169.8 nTPM
Mouse:39.4 nTPM
Allen mouse:1.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 77.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.8
1870 Female, age 42, unknown 71.4
1827 Male, age 72, unknown 70.3
2019 Male, age 18, unknown 65.8
1833 Male, age 53, unknown 63.9
1830 Male, age 51, unknown 63.8
2411 Female, age 72, unknown 62.6
2219 Male, age 76, both hemispheres 62.2
2828 Female, age 72, unknown 61.0
2586 Male, age 75, left hemisphere 50.1
2666 Male, age 74, left hemisphere 47.1
Dorsal raphe nucleus
nTPM: 72.7
2298 Female, age 72, unknown 86.8
2047 Male, age 72, unknown 74.9
2750 Male, age 76, both hemispheres 72.3
1828 Male, age 53, unknown 71.0
2016 Female, age 72, unknown 58.8
Inferior colliculus
nTPM: 77.9
2097 Female, age 72, unknown 85.1
1890 Male, age 53, unknown 76.7
2849 Male, age 72, unknown 75.3
1848 Female, age 42, unknown 74.6
Median raphe nucleus
nTPM: 72.8
2220 Male, age 76, midline 72.8
Periaquaductal grey, anterior
nTPM: 70.6
1947 Male, age 18, unknown 77.1
2502 Female, age 75, unknown 69.1
1795 Male, age 51, unknown 65.6
Periaquaductal grey, dorsal
nTPM: 62.9
2850 Male, age 76, both hemispheres 72.3
1840 Male, age 53, unknown 65.5
1831 Male, age 72, unknown 61.5
2464 Female, age 72, unknown 52.4
Periaquaductal grey, lateral
nTPM: 65.4
2272 Male, age 74, both hemispheres 74.2
2053 Male, age 18, unknown 65.4
2140 Male, age 76, both hemispheres 56.5
Pretectal area
nTPM: 73.0
1944 Female, age 72, unknown 82.6
1817 Female, age 42, unknown 82.2
2667 Female, age 75, unknown 81.5
2273 Male, age 74, both hemispheres 79.3
2224 Female, age 72, unknown 77.9
1816 Male, age 51, unknown 74.9
2007 Male, age 72, unknown 73.0
1815 Male, age 53, unknown 68.3
2825 Male, age 18, unknown 67.6
2407 Male, age 75, both hemispheres 58.5
2316 Male, age 76, right hemisphere 56.5
Red nucleus
nTPM: 68.2
1821 Female, age 72, unknown 95.5
1865 Male, age 51, unknown 73.3
2823 Male, age 76, right hemisphere 71.1
2725 Female, age 75, unknown 70.9
1954 Female, age 42, unknown 68.9
1904 Male, age 53, unknown 67.3
2503 Female, age 72, unknown 66.4
2769 Male, age 72, unknown 65.2
2785 Male, age 18, unknown 64.0
2584 Male, age 75, left hemisphere 63.0
2227 Male, age 72, unknown 62.4
2588 Male, age 74, left hemisphere 51.0
Substantia nigra
nTPM: 74.1
1889 Female, age 72, unknown 91.9
1916 Female, age 42, unknown 91.4
1941 Male, age 53, unknown 87.8
1851 Male, age 51, unknown 85.4
2241 Male, age 72, unknown 78.2
2699 Male, age 18, unknown 76.6
2409 Female, age 72, unknown 63.5
2665 Male, age 74, both hemispheres 58.6
2590 Female, age 75, unknown 56.0
2583 Male, age 75, right hemisphere 51.5
Superior colliculus
nTPM: 68.7
2587 Male, age 74, left hemisphere 82.6
2668 Female, age 75, unknown 76.4
1895 Male, age 76, right hemisphere 73.3
1913 Female, age 42, unknown 73.1
1796 Male, age 53, unknown 69.6
2087 Female, age 72, unknown 67.7
1839 Male, age 51, unknown 64.1
1995 Male, age 72, unknown 62.5
2261 Male, age 18, unknown 61.9
2664 Male, age 75, both hemispheres 56.0
Ventral tegmental area
nTPM: 71.2
1915 Female, age 42, unknown 81.9
2218 Male, age 76, both hemispheres 79.0
2223 Female, age 72, unknown 76.3
2410 Female, age 72, unknown 73.6
1942 Male, age 51, unknown 58.8
2021 Male, age 53, unknown 57.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 200.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 200.7
Samples: 183

Max nTPM: 346.3
Min nTPM: 121.6
Std nTPM: 38.8
Median nTPM: 196.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 346.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 333.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 310.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 295.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 291.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 290.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 283.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 277.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 277.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 277.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 274.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 201.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 201.7
FF:10158-103A5 76 years, female 201.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 169.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 143.1
Samples: 4

Max nTPM: 194.1
Min nTPM: 106.6
Sample A Female 194.1
Sample B Female 130.7
Sample C Male 140.8
Sample D Male 106.6
Midbrain
nTPM: 158.0
Samples: 4

Max nTPM: 201.6
Min nTPM: 136.6
Sample A Female 201.6
Sample B Female 136.6
Sample C Male 146.2
Sample D Male 147.6
Periaqueductal gray
nTPM: 132.7
Samples: 3

Max nTPM: 140.2
Min nTPM: 122.8
Sample B Female 122.8
Sample C Male 140.2
Sample D Male 135.2
Superior colliculi
nTPM: 169.9
Samples: 4

Max nTPM: 217.4
Min nTPM: 140.3
Sample A Female 217.4
Sample B Female 142.0
Sample C Male 179.7
Sample D Male 140.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 39.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.4
Samples: 4

Max nTPM: 45.1
Min nTPM: 34.9
Sample A Male 42.1
Sample B Male 35.6
Sample C Female 34.9
Sample D Female 45.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
68745006 Antisense, RP_050210_01_A12, Mouse strain C57BL/6J (56 days, male) 1.8

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