MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:86.9 nTPM
HPA Brain:204.5 nTPM
GTEx:86.9 nTPM
FANTOM5:402.2 Scaled Tags Per Million
Mouse:10.5 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 204.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 154.4
1830 Male, age 51, unknown 208.1
2411 Female, age 72, unknown 192.6
1833 Male, age 53, unknown 181.5
2019 Male, age 18, unknown 181.1
1870 Female, age 42, unknown 178.5
2828 Female, age 72, unknown 141.1
2666 Male, age 74, left hemisphere 124.3
2219 Male, age 76, both hemispheres 119.9
1827 Male, age 72, unknown 112.4
2586 Male, age 75, left hemisphere 104.4
Dorsal raphe nucleus
nTPM: 114.7
2750 Male, age 76, both hemispheres 195.6
2016 Female, age 72, unknown 129.3
1828 Male, age 53, unknown 107.8
2298 Female, age 72, unknown 71.1
2047 Male, age 72, unknown 69.7
Inferior colliculus
nTPM: 100.6
1890 Male, age 53, unknown 107.9
2849 Male, age 72, unknown 105.0
1848 Female, age 42, unknown 102.9
2097 Female, age 72, unknown 86.5
Median raphe nucleus
nTPM: 94.3
2220 Male, age 76, midline 94.3
Periaquaductal grey, anterior
nTPM: 91.4
2502 Female, age 75, unknown 108.6
1947 Male, age 18, unknown 96.4
1795 Male, age 51, unknown 69.3
Periaquaductal grey, dorsal
nTPM: 78.5
2464 Female, age 72, unknown 121.0
1831 Male, age 72, unknown 83.0
2850 Male, age 76, both hemispheres 64.7
1840 Male, age 53, unknown 45.2
Periaquaductal grey, lateral
nTPM: 85.9
2272 Male, age 74, both hemispheres 99.0
2053 Male, age 18, unknown 93.7
2140 Male, age 76, both hemispheres 65.1
Pretectal area
nTPM: 98.5
2316 Male, age 76, right hemisphere 149.2
1815 Male, age 53, unknown 148.2
2407 Male, age 75, both hemispheres 117.8
1817 Female, age 42, unknown 110.5
2007 Male, age 72, unknown 100.2
2825 Male, age 18, unknown 98.8
2273 Male, age 74, both hemispheres 90.9
2224 Female, age 72, unknown 84.7
1944 Female, age 72, unknown 62.9
2667 Female, age 75, unknown 61.4
1816 Male, age 51, unknown 59.1
Red nucleus
nTPM: 204.5
1865 Male, age 51, unknown 251.6
2823 Male, age 76, right hemisphere 241.6
1904 Male, age 53, unknown 237.8
1821 Female, age 72, unknown 235.7
2503 Female, age 72, unknown 212.9
2785 Male, age 18, unknown 202.8
2227 Male, age 72, unknown 201.6
2769 Male, age 72, unknown 200.9
1954 Female, age 42, unknown 189.5
2725 Female, age 75, unknown 189.3
2588 Male, age 74, left hemisphere 161.3
2584 Male, age 75, left hemisphere 128.8
Substantia nigra
nTPM: 114.4
2409 Female, age 72, unknown 143.0
1851 Male, age 51, unknown 132.7
2590 Female, age 75, unknown 131.0
2583 Male, age 75, right hemisphere 123.4
1889 Female, age 72, unknown 120.7
2699 Male, age 18, unknown 120.6
2241 Male, age 72, unknown 112.5
1941 Male, age 53, unknown 102.7
1916 Female, age 42, unknown 80.9
2665 Male, age 74, both hemispheres 76.4
Superior colliculus
nTPM: 134.4
1995 Male, age 72, unknown 202.9
1913 Female, age 42, unknown 196.3
1895 Male, age 76, right hemisphere 183.5
2587 Male, age 74, left hemisphere 145.3
2668 Female, age 75, unknown 145.0
1839 Male, age 51, unknown 142.4
1796 Male, age 53, unknown 93.9
2087 Female, age 72, unknown 81.5
2261 Male, age 18, unknown 77.0
2664 Male, age 75, both hemispheres 75.7
Ventral tegmental area
nTPM: 129.1
2410 Female, age 72, unknown 170.2
2223 Female, age 72, unknown 159.6
2021 Male, age 53, unknown 122.1
1942 Male, age 51, unknown 111.9
1915 Female, age 42, unknown 106.4
2218 Male, age 76, both hemispheres 104.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 86.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.9
Samples: 183

Max nTPM: 268.5
Min nTPM: 7.0
Std nTPM: 43.8
Median nTPM: 79.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 268.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 250.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 229.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 207.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 197.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 194.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 184.8
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 174.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 163.3
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 162.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 161.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 402.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 402.2
FF:10158-103A5 76 years, female 402.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 12.5
Min nTPM: 9.4
Sample A Male 9.4
Sample B Male 10.6
Sample C Female 12.5
Sample D Female 9.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68445107 Antisense, RP_050111_02_G09, Mouse strain C57BL/6J (56 days, male) 0.2
71015800 Antisense, RP_050725_02_G11, Mouse strain C57BL/6J (56 days, male) 0.1

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